Famous paleobiologist savages Stephen Meyer’s ID book

September 20, 2013 • 5:15 am

Charles R. Marshall, once my colleague here at Chicago, is now a professor at the Department of Intergrative Biology at the University of California at Berkeley. Along with a handful of other people, including Andy Knoll, Jim Valentine, and Martin Brasier, Marshall is one of the most respected experts on the evolution of early life.  He specializes in the Cambrian Explosion and has written several influential papers on it, including the 2006 paper given at bottom (free download).

Marshall has just published a review of Stephen Meyer’s ID book, Darwin’s Doubt, in one of the world’s most prestigious scientific journals, Science (reference below, but I’m not sure readers get a free download).  And his review is a complete pan, though written without rancor or “shrillness.”

The name of Marshall’s review, “When prior belief trumps scholarship,” gives away the game, for Meyer’s book is completely motivated by his attempt to show that an intelligent designer was responsible for the Cambrian Explosion of animal phyla around 545 million years ago.  Meyer’s book has been trashed by every competent scientific reviewer I’ve seen, including Don Prothero and Nick Matzke, but this is the first major review in a major scientific journal.

Meyer won’t take much comfort from words like these, which accuse him (as have other reviewers) of “a systematic failure of scholarship”. But of course that’s what’s required when you have to push aside any truth that might impede the return of Jesus:

Meyer’s scientific approach is negative. He argues that paleontologists are unable to explain the Cambrian explosion, thus opening the door to the possibility of a designer’s intervention. This, despite his protest to the contrary, is a (sophisticated) “god of the gaps” approach, an approach that is problematic in part because future developments often provide solutions to once apparently difficult problems.

Darwin’s Doubt begins with a very readable review of our knowledge of the Cambrian explosion. Despite its readability and a plethora of scholarly references, however, there are substantial omissions and misrepresentations. For example, Meyer completely omits mention of the Early Cambrian small shelly fossils and misunderstands the nuances of molecular phylogenetics, both of which cause him to exaggerate the apparent suddenness of the Cambrian explosion.

. . . And so even after reading the flawed first part of his book, I dared hope that Meyer might point the way to fundamental problems in the way we paleontologists think about the Cambrian explosion.

However, my hope soon dissipated into disappointment. His case against current scientific explanations of the relatively rapid appearance of the animal phyla rests on the claim that the origin of new animal body plans requires vast amounts of novel genetic information coupled with the unsubstantiated assertion that this new genetic information must include many new protein folds. In fact, our present understanding of morphogenesis indicates that new phyla were not made by new genes but largely emerged through the rewiring of the gene regulatory networks (GRNs) of already existing genes (1). Now Meyer does touch on this: He notes that manipulation of such networks is typically lethal, thus dismissing their role in explaining the Cambrian explosion. But today’s GRNs have been overlain with half a billion years of evolutionary innovation (which accounts for their resistance to modification), whereas GRNs at the time of the emergence of the phyla were not so encumbered. The reason for Meyer’s idiosyncratic fixation with new protein folds is that one of his Discovery Institute colleagues has claimed that those are mathematically impossibly hard to evolve on the timescale of the Cambrian explosion.

As Meyer points out, he is not a biologist; so perhaps he could be excused for basing his scientific arguments on an outdated understanding of morphogenesis. But my disappointment runs deeper than that. It stems from Meyer’s systematic failure of scholarship. For instance, while I was flattered to find him quote one of my own review papers (2)—although the quote is actually a chimera drawn from two very different parts of my review—he fails to even mention the review’s (and many other papers’) central point: that new genes did not drive the Cambrian explosion. His scholarship, where it matters most, is highly selective.

The ending is very polite (Charles isn’t a contentious guy), but still sticks a knife in the book:

Meyer’s book ends with a heart-warming story of his normally fearless son losing his orientation on the impressive scree slopes that cradle the Burgess Shale, the iconic symbol of the Cambrian explosion, and his need to look back to his father for security. I was puzzled: why the parable in a book ostensibly about philosophy and science? Then I realized that the book’s subtext is to provide solace to those who feel their faith undermined by secular society and by science in particular. If the reviews on Amazon.com are any indication, it is achieving that goal. But when it comes to explaining the Cambrian explosion, Darwin’s Doubt is compromised by Meyer’s lack of scientific knowledge, his “god of the gaps” approach, and selective scholarship that appears driven by his deep belief in an explicit role of an intelligent designer in the history of life.

This review is important as previous critical reviews have been dismissed by the Discovery Institute (DI) because their authors weren’t recognized experts on the Cambrian Explosion (this is, for example, what the DI did to Don Prothero’s cogent but negative review that was published on Scepticblog.  Well, Marshall’s review can’t be dismissed so easily: it’s in a refereed journal—a major journal—and is by a recognized expert on the topic of Meyer’s book.

One thing is absolutely predictable: the DI will simply dismiss this review, although I don’t know on what grounds. Given that they have none, they’ll probably just whine that the Scientific Establishment can’t handle the truth (shades of Jack Nicholson!).  Despite its claim to be science, Intelligent Design never has, and can’t, accept scientific criticism. So they go their own merry way, peddling their lies and religion to the subset of Americans who want real scientific assurance that God and Jesus are in there somewhere.

It does say something, though, that modern creationists can’t just dismiss science, but have to tackle it on its own turf.  And they always fail when they try.

h/t: David Sepkoski

____________

Marshall, C.R.  2006.  Explaining the Cambrian “explosion” of animals.  Annual Review of Earth and Planetary Sciences 34: 355-384.
Marshall, C.R. 2013.  When prior belief trumps scholarship.  Science 341:1344. DOI: 10.1126/science.1244515

Amazing footage of camera-clad eagle: real or fake?

September 19, 2013 • 4:18 pm

If this video is real, it’s one of the most amazing bird films I’ve seen. It was posted three days ago, apparently from France, and already has nearly 2.4 million views.

It seems to show footage from a camera mounted on the back of an eagle, and really gives you the sense of what it’s like to soar above the ground:

However, as the Los Angeles Times reports, the source and authenticity of the video hasn’t yet been verified:

The video was posted Monday by YouTube user Srachi. The posting lists the location of the flight simply as the Mer de Glace area of Chamonix, France. Mer de Glace, or Sea of Ice, is one of the longest glaciers in the Alps, extending for 3½ miles. Deep greenery, blue sky and snow-touched mountains fall away, bumpily, beneath the bird as it flies.

Efforts by the L.A. Times to reach the video’s creator were unsuccessful as of the time of this posting. But the video had created a sensation by Thursday, with nearly 1.7 million views.

. . .How was it done? Some news outlets say it was taken from the back of the eagle with a GoPro, a small camera used for remote photography and video.

Scientists design animal backpacks of all sorts for their feathered test subjects, and for many different purposes. Many are GPS-based, so that researchers can track the long-distance trips of migrating birds. Others seek to use the birds as their eyes and ears in the environment. One team at Cornell University is building a removable backpack that draws energy from the bird’s movements to power a host of sensors.

And, if you have 53 minutes to spare (believe me, it won’t be wasted), watch this show recommended by the Times: an episode of BBC’s Earthflight that used “microlight aircraft, paragliders, drones and camera-carrying birds” to capture remarkable footage of more than 100 species of airborne birds from 40 countries. The show, which took four years to film, will be released in six episodes. The link above gives the full episode filmed in Europe.

Oh, those crazy Germans!

September 19, 2013 • 10:57 am

Visiting the men’s room at the Munich airport, I saw what looked like a fly in the bowl.  Then I realized that all the bowls had flies—realistic looking flies painted on the porcelain.

I’ve heard about this before, and the apocryphal explanation is that you’re supposed to aim at the fly. I have no idea whether this is true, but below you see what males confront  when nature calls at Flughafen München:

Urinal

Enlarging this, one sees a fine specimen of Musca domestica:

Fly

Needless to say, I had to wait until the men’s room emptied before taking these pictures!

Another striking feature of this restroom is that each urinal is separated from the others by partitions, presumably to allow you some privacy while your paternal apparatus is in use:

Partitions

Atheist website meetup

September 19, 2013 • 9:43 am

Reader Chak Dantuluri is organzing an Indian dinner at his house in Naperville, a Chicago suburb, a week from this Saturday (i.e., on Sept. 28) at 7 p.m. I’ll be there and so will Hemant Mehta (aka “The Friendly Atheist”) as well as other heathens. Chak’s wife Kavita, who I’m told is an excellent cook, will be preparing a largely home-cooked Indian meal, including both north and south Indian food.

This is sort of a benefit, so we’re asking everyone to donate at the dinner to our official website charity™, Doctors Without Borders (suggested donation $50); all the proceeds will go to that organization.

If you’re in the area and interested (there is room for 5-7 more people), contact Chak at his email address, drchak@yahoo.com.

I return, and storms in Chicago

September 19, 2013 • 8:42 am

I’ve returned to the U.S., but it will take a few days before I’m up to speed and able to deal with all the creationism, accommodationism, and other mishigas I usually write about. Also, I have 471 photos, and hope to show you some of the scenery and food of Poland as well as a fairly detailed overview of Auschwitz. (Don’t worry: I’m not going to post all the photos I took!)

The Polish Rationalists Facebook page, Polskie Stowarzyszenie Racjonalistów, has posted a bunch of pictures of my three talks in Warsaw and Cracow, as well as of our jaunts around Warsaw for sightseeing. You can see their photos here.  I want to thank that organization and the Polish Skeptics for their terrific hospitality, and to give a special shout-out to Kaja Bryx, who did the lion’s share of organizing my visit (no easy task!). You’ll see Kaja in red (shielding me with an umbrella from the storms in Warsaw) at the link above. And of course I’m immensely grateful to my hosts in Dobrzyn, Andrzej and Malgorzata, for providing friendship, great food, a restful atmosphere, and Hili, the Rationalist Cat.

In the meantime, back to business. There was a storm the evening I left Chicago, and one last night when I returned.  I took photos of both.

Here’s the one on Sept. 2:

Storms

And last night’s, which was a humdinger. It came in very quickly around sunset and dumped a ton of rain, accompanied by a lot of lightning and thunder. The oncoming storm was impressive as it blotted out the last rays of the sun.  Five minutes after I took this photo, one couldn’t see the city skyline:

chicago

Let a thousand ignoramuses bloom: Texas creationist wants pro-evolution texts adopted!

September 19, 2013 • 3:32 am

(Perhaps the plural is “ignorami”?)

As you may know, the Texas State Board of Education is holding hearings this week for new biology textbooks. This is always a farce, enlivened not only by the testimony of religious creationists (an obvious tautology), some of who approach frothing lunacy in their testimony, but also by the sympathetic questions of school board members, who have often been creationists.

In the last four years, the Texas State Board of Education has asked biology textbook publishers to adhere to a “show-the-strengths-and-weaknesses-of-evolution” standard (see here), so that proposed books are supposed to highlight these “problems” with evolution.

  • Stasis and “sudden appearance’ in the fossil record (supposedly not explained by evolution)
  • Uncertainties about the origin of life and self-replicating molecules
  • Inability to explain “biochemical complexity” (the pet love of “cdesign proponentsists”

(You can read more about the latest creationist textbook madness here.)

The Texas Freedom Network (TFN), an activist pro-evolution group, has also had doctoral candidates from Texas Universities analyze some of the proposed books. Their report, which you can find here, shows that textbook publishers, thank Ceiling Cat, have not watered down the proposed biology books to meet the creationist guidelines. The main conclusion is this:

Our reviews reveal that creationists on the State Board of Education have failed to pressure publishers into including “junk science” that questions evolutionary theory in the new high school biology materials. Indeed, all of the publishers have submitted biology instructional materials that honestly address and support the science of evolution and that do not include pseudoscience intended to water down or “disprove” evolution.

But that’s not the end of it, of course. I’m a bit worried this round because, as I reported last May, the school board asked eleven reviewers to look over the proposed biology texts. Six of these were creationists or had creationist sympathies! This is absurd in a supposedly advanced scientific nation, and a shameful blot on the intelligence of those who set the science standards for one of our largest states. I’m sure my friends at the University of Texas are gnashing their teeth.

Perhaps the most farcical bit of testimony this week is shown in the video below. It gives the testimony by Don McLeroy, a dentist who was once head of the Texas State Board of Education. He’s a dentist and a creationist, apparently lacking any understanding of science, though he seems well versed in scripture. McLeroy  played hob with Texas science standards for years: he was on the Board for 13 years and its chairman for two.

The issue with Texas as a benighted state vis-à-vis textbooks is that publishers are loath to issue separate editions of public-school texts, as that costs money, and they don’t want to publish “Texas editions” purged of evolutionary biology.

At any rate, it appears that McLeroy has gone off the rails, for in this video he argues that the state should go ahead and adopt all the evolution-filled texts, because that will show students how pathetically weak the case for evolution is! In other words, he’s arguing the pro-evolution case in the misguided hopes that students, by reading the good textbooks, will somehow discern the truth of Genesis amidst the truths of evolution.

Yesterday’s report from the Texas Freedom Network notes this bizarre ploy, adding that (as you’ll see in the video), McLeroy clearly flaunts his religious agenda in his testimony, something that will make a good First Amendment issue:

Speaking at the SBOE’s public hearing on the proposed new science textbooks publishers submitted for approval in April, McLeroy — who lost a re-election bid in 2010 — launched into one of the most bizarre arguments we heard throughout the day. Before and after he spoke, creationists sharply criticized the textbooks for failing to include their discredited arguments attacking evolution. But not McLeroy. The College Station dentist insisted that the SBOE should actually adopt the textbooks because, he said repeatedly and emphatically, the evidence supporting evolution in those books is “weak”:

“Ironically, evolutionists argue that creationists want to force their religious views on the texts. But just the teaching of biology does that, and teaching evolution demonstrates that’s not how God did it. Since true, testable science trumps dogmatism, strike the final blow to the teaching of evolution. Support the Bible, and adopt these books.”

. . . But McLeroy’s testimony was valuable in the sense that it exposed, once and for all, just how disingenuous he and other anti-evolution activists were during the debate over the science curriculum standards in 2009. At the time, McLeroy and his allies on the state board insisted they weren’t trying to insert their religious beliefs into the standards and the new textbooks that would follow. On Tuesday, McLeroy said this about his (inaccurate) contention that the new textbooks fail to show how the fossil record and the complexity of the cell support evolution:

“I’m just hoping that a young creationist … will sit there and say, ‘Look, is this all the evidence they have? Well, maybe God didn’t use evolution to do it.’”

Here’s the video. McLeroy testifies for 3.5 minutes, going all over the map about stasis and biochemical complexity, and then fields questions from Board of Education members.

His shtick is apparently the usual one: we need to see evolution in real time, and historical evidence simply doesn’t count. (Presumably McLeroy wouldn’t accept the existence of Jesus, then.) Further, evolutionary biologists haven’t yet produced every tiny bit of evidence we need to “prove” evolution. Look at McLeroy’s statement from the video:

“Well, how many facts do you need to show evolution? Well it’s in the billions and billions and trillions.”

That would make for a very long book!

I’m pleased to see that WEIT makes an appearance at 5:30, where I’m faulted for not going deep enough into the origin of biochemical complexity (note that my book refers the reader to Ken Miller’s and other people’s excellent discussion of this topic).  I take this to mean that McLeroy wants my book used so that students can see for themselves that biochemical complexity—I presume he means “irreducible complexity”, in which biochemical pathways supposedly couldn’t have evolved by natural selection since the intermediate stages could not have been adaptive—is a severe problem for evolution.

Well, McLeroy, bring it on! Let’s adopt all those pro-evolution books, and see if Texas students are so brainwashed by religion that they’ll buy the creationist/ID arguments without even having heard them!

Texas will decide in November which textbooks to adopt.

Hili Dialogue: Thursday

September 19, 2013 • 2:11 am

A: Are you looking for something?
Hili: No, just checking if Jerry’s book is in its place.

It’s in there somewhere (I donated a special edition with a special Hili cartoon).

66136_10201621223519720_1083656083_n

In Polish:

Ja: Szukasz czegoś?
Hili: Nie, tylko sprawdzam, czy książka Jerrego jest na swoim miejscu.

Well, I learned that my Polish name is “Jerrego.”