Friday: Hili Dialogue (and diverse lagniappe)

March 4, 2016 • 6:15 am

Out in New Mexico, reader Linda Calhoun is experiencing environmental anomalies, and asked me to pose a question to readers who like birds. To wit:

I would like to hear from my fellow WEIT birders if possible.

Questions:  Are you experiencing unusual weather in your area?  And if you are, is it affecting what you’re seeing at your bird feeders?

It has been VERY warm here.  The juncos are almost gone, the pine siskins are completely gone, and I’m already seeing goldfinches, which don’t usually show up on their way through until mid to late April.

Answer in the comments, please.

Just a few notes on March 4. On this day in 1519 Hernan Cortés landed in Mexico, soon to wreak havoc on the locals. In 1789 the first U.S. Congress met in New York City, making the Constitution and Bill of Rights (including freedom of/from religion and freedom of expression) into law. And, in 1837, the City of Chicago was incorporated! Births on this day included Knute Rockne (1888) and Rick Perry (1950); deaths included those of Nikolai Gogol (1852), Knut Ångström (1910), and Minnie Pearl (1996, “How-DEEE!”). Meanwhile in Dobrzyn, Hili looks very suspicious about philosophy, though I’m not sure she’s actually read Plato:

A: What do you think of Plato?
Hili: I do not trust him one tiny bit.

(Photo: Sarah Lawson)

Af

In Polish:

Ja: Hili: co sądzisz o Platonie?
Hili: Nie ufam mu ani za grosz.

(Zdjęcie: Sarah Lawson)

Lagniappe: A photo from theFacebook site Meanwhile in Canada :

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And Gus in the sun:

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Reader George Boley has a “spot the. . .” photo:

Can you spot the cat? It’s Cowboy. He’s 17 this year!

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And a cartoon tw**ted by Godless Spellchecker:

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PLoS ONE retracts goddy paper on the human hand

March 3, 2016 • 3:17 pm

Well, that didn’t take long. As I noted this morning, the journal PLoS ONE published a paper by three Chinese scientists about the biomechanics of the human hand. Bizarrely, the paper mentioned three times that this was evidence for a creator’s plan.

Now, according to Retraction Watch, which gives links, the entire paper has been retracted, as evidenced from this comment in the discussion:

The PLOS ONE editors have followed up on the concerns raised about this publication. We have completed an evaluation of the history of the submission and received advice from two experts in our editorial board. Our internal review and the advice we have received have confirmed the concerns about the article and revealed that the peer review process did not adequately evaluate several aspects of the work.

In light of the concerns identified, the PLOS ONE editors have decided to retract the article, the retraction is being processed and will be posted as soon as possible. We apologize for the errors and oversight leading to the publication of this paper.

Now they could have fixed the paper simply by taking out the three sentences referring to “the creator”, but it looks as if there were other problems as well. Kudos to the journal for acting so quickly, but only mini-kudos. The paper was, after all, reviewed by several scientists and approved by an editor. And of course they had to do something because the journal was really looking bad.

I’m not a big fan of PLoS ONE, whose philosophy seems to be that if the methods and conclusions are sound, the paper should be published—regardless of whether the results are interesting. In principle, that means that any finding could be published, although that’s not the way it works.

What this does show is what all biologists know: we’re very hostile to those who invoke the supernatural in their science. After centuries of experience showing that invoking gods adds nothing to our understanding of the cosmos. As Laplace supposedly said, “We don’t need that hypothesis.”

Hubble space telescope breaks distance record for seeing stuff in space

March 3, 2016 • 3:15 pm

NASA announced today that the Hubble Space Telescope has visualized an object (a galaxy) 13.4 billion light years away. That mans, of course, that the light we see left the galaxy only a bit after the Big Bang. This is all more or less above my pay grade, but it’s still cool:

By pushing NASA’s Hubble Space Telescope to its limits, an international team of astronomers has shattered the cosmic distance record by measuring the farthest galaxy ever seen in the universe. This surprisingly bright infant galaxy, named GN-z11, is seen as it was 13.4 billion years in the past, just 400 million years after the Big Bang. GN-z11 is located in the direction of the constellation of Ursa Major.

“We’ve taken a major step back in time, beyond what we’d ever expected to be able to do with Hubble. We see GN-z11 at a time when the universe was only three percent of its current age,” explained principal investigator Pascal Oesch of Yale University. The team includes scientists from Yale University, the Space Telescope Science Institute (STScI), and the University of California.

Here’s a very short video zeroing in on GN-z11:

The announcement continues (it’s much longer than the excerpts I’ve given here):

Astronomers are closing in on the first galaxies that formed in the universe. The new Hubble observations take astronomers into a realm that was once thought to be only reachable with NASA’s upcoming James Webb Space Telescope.

This measurement provides strong evidence that some unusual and unexpectedly bright galaxies found earlier in Hubble images are really at extraordinary distances. Previously, the team had estimated GN-z11’s distance by determining its color through imaging with Hubble and NASA’s Spitzer Space Telescope. Now, for the first time for a galaxy at such an extreme distance, the team used Hubble’s Wide Field Camera 3 to precisely measure the distance to GN-z11 spectroscopically by splitting the light into its component colors.

. . . The results reveal surprising new clues about the nature of the very early universe. “It’s amazing that a galaxy so massive existed only 200 million to 300 million years after the very first stars started to form. It takes really fast growth, producing stars at a huge rate, to have formed a galaxy that is a billion solar masses so soon,” explained investigator Garth Illingworth of the University of California, Santa Cruz.

And a diagram explaining more: “Now, for the first time for a galaxy at such an extreme distance, the team used Hubble’s Wide Field Camera 3 to precisely measure the distance to GN-z11 spectroscopically by splitting the light into its component colors.”

image2i1607bw
Credits: NASA, ESA, and A. Feild (STScI) [JAC: at first I thought it read “A Felid”!]

A former law clerk: Antonin Scalia “generally detested science”

March 3, 2016 • 2:15 pm

Even before the inevitable encomiums about Antonin Scalia poured in after his death, it was already bruited about that he was a fiercely smart man—even if misguided in his originalism and conservatism. But how smart can a man be if he disses science? Can he be both smart and ignorant?

For surely Scalia wasn’t “ignorant” in the sense of not knowing that science was out there, and that there was a consensus about stuff like, say, evolution.

Remember, if you will, that Scalia, along with William Rehnquist, were the only dissenters in the famous case of Edwards v. Aguillard (1987), in which the Court overturned a lower-court ruling that a Louisiana law—the “Balanced Treatment Act” mandating the teaching of creationism alongside evolution in public schools—was legal. That was the case in which the three-pronged Lemon Test convinced the other seven judges that such a law did not have a secular purpose and that it advanced a particular religion and fostered excessive government entanglement with religion. You can read Scalia and Rehnquist’s dissent here. You’ll see that they denied that the Act had a religious purpose, but maintained that it fostered academic freedom construed as “students’ freedom from indoctrination.”  Scalia and Rehnquist lost, but science won.

One of Scalia’s clerks was Bruce Hay, now a professor at Harvard Law School, though he looks about 18 years old. In a February 27 posting on Salon, Hay has severely indicted his former mentor in a piece called “I thought I could reason with Antonin Scalia: a more naive young fool never drew breath.” Hay minces no words:

Antonin Scalia generally detested science. It threatened everything he believed in. He refused to join a recent Supreme Court opinion about DNA testing because it presented the details of textbook molecular biology as fact. He could not join because he did not know such things to be true, he said. (On the other hand, he knew all about the eighteenth century. History books were trustworthy; science books were not.) Scientists should be listened to only if they supported conservative causes, for example dubious studies purporting to demonstrate that same-sex parenting is harmful to children. Scientists were also good if they helped create technologies he liked, such as oil drills and deadly weapons.

His own weapon was the poison-barbed word, and the battleground was what he once labeled the Kulturkampf, the culture war. The enemy took many forms. Women’s rights. Racial justice. Economic equality. Environmental protection. The “homosexual agenda,” as he called it. Intellectuals and universities. The questioning of authority and privilege. Ambiguity. Foreignness. Social change. Climate research. The modern world, in all its beauty and complexity and fragility.

. . . When I applied for a clerkship at the Court, my hero Justice Brennan quickly filled all his positions, so Scalia became my first choice. He offered me a job and I thought I’d won the lottery. I knew we differed politically, but he prized reason and I would help him be reasonable. A more naive young fool never drew breath.

. . . What I took for the pursuit of reason in those chambers was in fact the manufacture of verbal munitions, to be deployed against civilian populations. From the comfort of our leather chairs, we never saw the victims.

In other words, Scalia was a master of confirmation bias.

At this point in his piece, Hay digresses severely, discussing a brilliant transgender woman, Mischa Haider, who left physics after getting her doctorate at Harvard because she was hounded, shamed, and humiliated by others for her change of gender. Such discrimination is detestable, and of course stems largely from ignorance and lack of empathy. But Hay decides to pin it on Scalia and his dislike of science:

[Haider] could not live with herself, she tells me, if she did not devote her talents to helping the many trans women whose lives are decimated by the bigotry and ignorance of those around them. Bigotry and ignorance inflamed by demagogues like Antonin Scalia, whose toxic rhetoric has done so much to incite and legitimate fear of gender nonconformity and elevate it to the level of constitutional principle. She is resolved to become a trans rights activist.

So that is Antonin Scalia’s contribution to physics.

I certainly agree that Scalia did nothing to foster gender equality or transgender acceptance (but did any cases of the latter ever come before him as Justice?). Still, that is an issue separate from his retrograde views of science. Hay’s article thus is two disparate articles: one on Scalia’s anti-science views, and the other on the opprobrium received by transgender people. The connection between the issues is tenuous: only neurons in the brain of a man whom Hay calls “erudite and frighteningly smart”. But how smart could Scalia really have been to be so strongly anti-science—to the point of denying that the Balanced Treatment Act had anything to do with religion? He may have been smart, but he was blinkered by his Catholicism.

As for Scalia’s lack of empathy for the oppressed, that too goes with being so conservative. Nevertheless, Scalia’s views on both science and gender tell us why Obama needs to replace him immediately with a more enlightened Justice.

h/t: Stephen S.

The “Angry Cat Man” talks to high-school biology students

March 3, 2016 • 1:09 pm

I spent an hour this morning talking about Why Evolution is True with two classes of advanced biology students from the University of Chicago’s Lab School. It was a great pleasure to interact with such a bright and interested group of kids, and they had lots of good questions. I won’t go into details, but two things stood out.

The first was that most of the student questions dealt with the relationship between evolution and religion. I had told them that there was a lot of religious resistance to evolution in the U.S., and to my book as well, but I expected the discussion would be largely about biology. Contrary to my expectation, the students wanted to know things like how we could overcome religious opposition to evolution, why so many religious people took exception to my lectures on evolution (I told them how students at Murray State had defaced the posters advertising my talk), what was it about evolution that produced such opposition to the scientific facts, and so on. I answered them as honestly as I could.

It was clear to me that they had already absorbed most of the biology in WEIT, and wanted to talk more about the social and philosophical implications of evolution. That was fine with me. But this isn’t unique to the Lab School: it happens most of the time when I make myself available to answer questions about the book. (I doubt that the students even know about my more recent book.) This tells me that people are deeply interested in the conflict between evolution and religion. In fact, most of the students, who I suspect are largely from well educated and fairly affluent families, seemed puzzled about why there was a conflict. I only wish some of them could spend a few weeks in a biology class in Mississippi.

Finally, one of the biology teachers told me that he occasionally sends his students items from this website. I was vastly amused to hear that at least one student reacted this way: “Oh no, not another thing from the Angry Cat Man!”

Maajid Nawaz on the Big Think: “No idea is above scrutiny; no people are beneath dignity”

March 3, 2016 • 10:00 am

Here’s Muslim reformer Maajid Nawaz on The Big Think discussing “How the PC regressive left can manifest bigotry and prejudice.” What he calls the “zero-sum” game of Authoritarian Leftists is the fact that people like him can’t win, for their criticism of Islam is automatically construed as criticism of Muslims, aka people of color, and that’s racism.

Nawaz’s bona fides to criticize Islam are impeccable, as are Ayaan Hirsi Ali’s. The former spent five years in an Egyptian jail as an Islamist before deciding that he needed to change and become a moderate reformer; Ali was subjugated, mutilated, and hounded by death threats. And both are “brown” people. Yet both are called Islamophobes. It’s a severe indictment of both atheism and humanism that people like these are demonized rather than admired for their courage and commitment.

If there’s one flaw in this talk, it’s that Nawaz seems a bit defensive, overly touting his credentials. But I suppose that’s critical for him to establish credibility in a world of identity politics.

h/t: Cindy

PLos ONE publishes paper giving credit to God for designing the human hand

March 3, 2016 • 9:00 am

Most of you have heard of this incident by now, at least if you’re following science blogs, but I wanted to wait for a response to my own email before posting it. Here’s the story: three Chinese authors published a paper in PLoS ONE about the biomechanics of the human hand (reference and free link below). The authors found, to nobody’s surprise, that the internal architecture of the hand is admirably adapted to grasping.

But to everyone’s surprise, the authors included in their paper not one, but THREE paeans to God. Here they are, from different parts of the paper:

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Screen shot 2016-03-03 at 6.50.09 AM Screen shot 2016-03-03 at 6.50.40 AM

I don’t know who spotted this mishigass, but it’s insupportable: pure creationism, a throwback to the “natural theology” of pre-Darwin days when the usefulness of adaptations was taken as evidence for a creator.

PLoS ONE has an unusual policy for a journal: it doesn’t gauge the importance of a paper before accepting it. Rather, the reviewers determine whether the paper’s methods support its results, and if they do, it’s published. That leads to some papers that, like this one, seem pretty trivial, but the journal has also published some excellent work. But there are too many editors, and not enough editorial oversight—as was clear in this case. I don’t know how many reviewers the paper had, but the editor who bears ultimate responsibility for this travesty is Renzhi Han of the Ohio State University Medical Center. How is it possible that nobody caught those statements? Did Han even read the paper?

Anyway, when several readers called this to my attention, I wrote an email to the media inquires section of PLoS ONE:

To: onepress@plos.org (PLos media inquiries)

Hello,

I’m a professor emeritus of evolutionary biology at the University of Chicago, and have just noticed that a new paper in PLoS ONE refers to the “creator” (i.e., God) several times. The paper (http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0146193) is by Min-Jin Liu et al, and says this about the biomechanics of human hand grasping:
“The explicit functional link indicates that the biomechanical characteristic of tendinous connective architecture between muscles and articulations is the proper design by the Creator to perform a multitude of daily tasks in a comfortable way.”
“Thus, hand coordination affords humans the ability to flexibly and comfortably control the complex structure to perform numerous tasks. Hand coordination should indicate the mystery of the Creator’s invention.”
and
” In conclusion, our study can improve the understanding of the human hand and confirm that the mechanical architecture is the proper design by the Creator for dexterous performance of numerous functions following the evolutionary remodeling of the ancestral hand for millions of years.”
Are you aware that your authors are putting not only religion, but creationism, into a scientific paper? This should be a tremendous embarrassment to the Public Library of Science journals.
I have posted this query on my website, which has nearly 40,000 subscribers, and I would appreciate it if you could tell me a. if this policy of allowing God and creationism in science papers is normal for your journal, and b. if not, what will you do to stop it?
Of course you are aware that this paper will be touted by creationists as evidence for God, and as “proof” that Intelligent Design is a scientific concept. We evolutionary biologists can’t help being misquoted, of course, but the three quotes above are by scientists, and are not distorted.
Sincerely,
Jerry Coyne
A few hours later, I got this response, which I gather is a form reply:

Dear Dr. Coyne,

Thank you for your message and for contacting us about this published article. I want to assure you that PLOS has been made aware of this issue and we are looking into it in depth. Our internal editors are reviewing the manuscript and will decide what course of action to take. PLOS’ publishing team is also assessing its processes. A comment has been posted to that effect at [this link].

Let us know if there is anything further we can do.

Kind Regards,
Chloe Medosch

PLOS | OPEN FOR DISCOVERY
Chloe Medosch | Publications Manager, PLOS ONE

Here’s the comment that PLoS posted subsequently:
A number of readers have concerns about sentences in the article that make references to a ‘Creator’. The PLOS ONE editors apologize that this language was not addressed internally or by the Academic Editor during the evaluation of the manuscript. We are looking into the concerns raised about the article with priority and will take steps to correct the published record.
Yes, the “creator” business was missed by the corrsponding editor, Dr. Han, and by at least two reviewers. Again, how did that happen? Inquiring minds want to know.
Retraction Watch (RW) reviews some of the strong reactions of scientists to the god interpolations, and also quotes editor Han as saying, “I am sorry for this has happened. I am contacting PLoS one to see whether we can fix the issue.” And in the comments to the RW article, someone points out that never mind the god bit (some people actually defended it)— the science itself was lame. Here’s one:
lartibartfast March 2, 2016 at 2:03 pm

Never mind the ‘Creator’ bit – that may have been an error of translation [JAC: it’s apparently not], and let the neo-Whorfians have a field day with this.

What I can’t understand is how this paper got accepted for publication in the first place, given its banality – here’s a representative quote:

“The neurological functions are controlled by the central nervous system (CNS) [8]. The CNS receives sensory information, such as smells, tastes, sounds, sights and tactile information, and responds to the information with an action …” (Not that it gets any better after that.)

This is K12-level stuff, if that.

We can expect that, if the goddy stuff is removed from the paper, as it undoubtedly will be, the Discovery Institute will scream bloody murder at the “censorship” of intelligent-design “evidence.” They may even give PLoS next year’s “Censor of the Year” award (I’m still plumping to get another one.) But let them scream, for we already have a more parsimonious and non-supernatural explanation for the remarkable adaptiveness of the human hand.

UPDATE: The readers’ comment on the PLoS paper, including some editors’ threats to resign if the “god” bit isn’t removed, are here. The authors claim that their word “creator” was misunderstood” and plead for the paper to stay. Even if they aren’t fibbing, it’s still unclear how the paper got published after review. The author’s statement:

We are sorry for drawing the debates about creationism. Our study has no relationship with creationism. English is not our native language. Our understanding of the word Creator was not actually as a native English speaker expected. Now we realized that we had misunderstood the word Creator. What we would like to express is that the biomechanical characteristic of tendious connective architecture between muscles and articulations is a proper design by the NATURE (result of evolution) to perform a multitude of daily grasping tasks. We will change the Creator to nature in the revised manuscript. We apologize for any troubles may have caused by this misunderstanding.

We have spent seven months doing the experiments, analysis, and write up. I hope this paper will not be discriminated only because of this misunderstanding of the word. Please could you read the paper before making a decision.

_______________
M.-J. Liu et al. 2016. Biomechanical characteristics of hand coordination in grasping activities of daily living. PLoS ONE, DOI: 10.1371/journal.pone.0146193

Readers’ wildlife photos

March 3, 2016 • 8:00 am

As my collection wildlife photos are on the other computer, which I’m taking back to work, I’ll put up today two photos fortuitously sent by Stephen Barnard, whose largesse from Idaho is endless. His notes are indented, and he furnished some information from Wikipedia:

A male Northern Harrier (Circus cyaneus):

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A drake Mallard (Anas platyrhynchos) in full breeding colors.

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Mallards are probably the most common duck, here and worldwide, and are the ancestor of most breeds of domestic ducks. Their ubiquity tends to obscure their beauty. Here’s an excerpt from the Wikipedia entry:

“The mallard is a rare example of both Allen’s Rule and Bergmann’s Rule in birds. Bergmann’s Rule, which states that polar forms tend to be larger thanrelated ones from warmer climates, has numerous examples in birds. Allen’s Rule says that appendages like ears tend to be smaller in polar forms to minimize heat loss, and larger in tropical and desert equivalents to facilitate heat diffusion, and that the polar taxa are stockier overall. Examples of this rule in birds are rare, as they lack
external ears. However, the bill of ducks is very well supplied with blood vessels and is vulnerable to cold.[citation needed]

“Due to the malleability of the mallard’s genetic code, which gives it its vast interbreeding capability [JAC: that last sentence is dead wrong: the duck’s ability to hybridize with other species almost certainly has nothing to do with “the malleability of its genetic code” whatever that means!], mutations in the genes that decide plumage colour are very common and have resulted in a wide variety of hybrids such as Brewer’s duck (mallard × gadwall, Anas strepera).”