Special treat: Pia dialogue

December 8, 2013 • 5:17 am

As a one-time Sunday treat, here is a dialogue with Hili’s predecessor: Pia.  Pia lived to the ripe old age of 14, and died in April of last year with but one tooth left in her head (but she was still able to nom birds and crunchies).  She was much more philosophical than Hili is now.  I have a lot of Pia dialogues, but they won’t be displayed, as we’re busy with Hili.

The dialogues started when Racjonalista asked me for permission to translate several of my posts into Polish. I said that was fine, but knowing that its proprietors, Andrzej and Malgorzata, had a cat, I asked for a “fee” of two cat pictures per article.  Those pictures turned into dialogues with Pia, and, when she died, with Kitten Hili, who is now a feisty teenager.

You can see her obituary, a dialogue, and some photos here.

Pia often expatiated on philosophy, and squabbled with Andrzej, but, as you see below, she was a cat, and that means she was deeply concerned with noms:

Pia: Your dinner is in the Cat, meaning me.
A: All of it?
Pia: No, just the piece of meat you cut off before going to answer the phone.

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Fox Week. 5: Readers’ fox photos

December 7, 2013 • 4:31 pm

Today we have two sets of photos taken by readers. The first is from Jon, whose pictures come from Northern Canada:

These pictures are from a chance encounter of young fox pups outside of their den. Their home was dug into the side of a sand hill that we stumbled upon by accident. The pups played in the setting sun for about an hour for us and it was magical.

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These photos come from reader Derek in Colorado:

Here are a couple of fox pictures from my backyard in suburban Denver. I wish there was a happier story to accompany these photos, but unfortunately this is a sad one.

When I first moved into the house, there were several foxes that would loiter around my house. Sometimes they would dig in the garden with me (see last picture), and sometimes they would hang out underneath the neighbors laundry exhaust.

They were not the prettiest foxes as they had mangey tails, but it was very fun to have visitors. I assumed the previous owners or someone nearby had been feeding them and they got comfortable around humans.

One day they stopped showing up though. I never figured out why until very recently when talking with a neighbor who read that some sort of fungus wiped out a large percentage of the local foxes.

I haven’t seen any foxes in a couple years, but hopefully their number will rebound and I will have garden helpers once again.

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Conference on “Hype in Science” today

December 7, 2013 • 1:53 pm

Given what’s gone on this week, it’s appropriate that I announce this.

There’s a very interesting one-day conference taking place at this very moment in Halifax, Nova Scotia. The topic is “Hype in Science” (real and LOLzy subtitle: “How can respectable journals publish such c**p?”); the program is here; and it’s sponsored by “Situating Science” a program funded by the Canadian government to promote “communication and collaboration among humanists and social scientists that are engaged in the study of science and technology.”

This is the program, prefaced with the blurb on its site:

Just recently, a special issue of the premier journal Science focused on “pressure and predators” in the communication of scientific results. A similar exposé appeared in The Economist. The peer review system, which is supposed to make science uniquely trustworthy, is collapsing under it own weight. Rogue journals and dubious scientific conferences blur the boundaries between respectable and sensational. The reluctance of researchers to submit – and of journals to publish – negative results or serious disciplinary critiques fosters a falsely progressive view in many disciplines. Papers presented as “breakthroughs” in areas deemed to be of “wide general interest” get top priority, are picked up by the popular press and find popular acceptance or notoriety in so far as they complement or conflict with the agendas of special interests. It is good that science engages the public, but some of the most publicity-attracting breakthroughs reported in the last few years by top journals such as Science, Nature or the Proceedings of the National Academy have turned out to over-hyped, misrepresented or false. No institution or publication seems to be immune.

Well, that’s a bit exaggerated—I wouldn’t call the peer-review system “collapsing” quite yet—but it’s time that we addressed this problem of hype, hype in both the scientific literature and popular science writing. (The latter is a bigger problem for journalists than for scientists who write popular stuff, for we scientists are trained to avoid overhyping stuff—not that all of us succeed!)

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Three of the talks are of special interest to Professor Ceiling Cat:

8:35am: “The “Arseniclife” Debacle.”
Rosie Redfield, Zoology, UBC.
Almost everyone got very excited when Science published NASA-supported research claiming that some bacteria can build their DNA with arsenic instead of phosphorus. But, in rapid ‘post-publication peer review’ on blogs and Twitter, chemists pointed out that such arsenic bonds were very unstable, and microbiologists decried the contaminated reagents and shoddy methodology. Redfield led the initial critique and refuted the conclusions in a series of experiments that she posted on her open-research blog and published in a follow-up Science article. Redfield has long been one of her own field’s most thoughtful critics; her own research addresses the contentious question of whether bacteria have sex.

I met Rosie in Canada at the Evolution meetings two years ago, and she was a firecracker! She told me the whole story of the arsenic “debacle,” not pulling any punches, and it was both fascinating and horrifying. It was her blogging that largely debunked the “arsenic life” story—a story that hasn’t yet, as far as I know, been retracted by Science nor disowned by its main author, Felisa Wolfe-Simon.

1:15 pm: “Epigenetics  and the New Lysenkoism.”
Florian Maderspacher, Elsevier, Senior Editor, Current Biology
Much is at stake in the current excitement over epigenetics as the means by which nature might trump nurture. Politically, the left roots for the latter and the right for the former. This divide and the need for news media to frame scientific results in larger contexts make it very hard to get a balanced picture of the importance and meaning of epigenetic mechanisms.

I know Florian, and he seems as dubious about the New Epigenetics Revolution as I am.  As you know from my many posts on this issue, while I think epigenetics is an exciting field, and has been important in evolution, what has not been important (at least according to the evidence) is the genetic assimilation of purely environmental modifications of DNA, like methylation, in the evolution of adaptive traits. I’ll be curious to find out what Florian says.

Finally, I’d like to hear the following talk just because it sounds unbearably postmodern (I’ve bolded all the postmodern buzzwords and phrases):

3:25 pm: “Race and IQ in the Postgenomic Age.”
Sarah Richardson, History of Science and of Studies of Women, Gender, and Sexuality, Harvard.
Claims about recent positive selection in brain- and behavior-related traits unique to different racial and ethnic groups are proliferating. Current structures in postgenomic bioscientific research are roadblocks to transformative scientific conversations about community standards for evolutionary cognitive genetics and its overlapping fields. Displacing the traditional notion of scientific communities as static, bounded and autonomous, the postgenomic biosciences are defined by their speed, transdisciplinarity and commercial context. We must ask: What is “the research community”? Who is an “expert”? And, how is the labor of substantive conceptual and methodological debate rewarded? Beginning with Bruce Lahn’s 2005 Science paper on microcephaly gene variants and racial differences in IQ, Richardson looks at the limitations of scientific peer review to handle the difficult methodological issues alongside the potentially explosive ethical and political dimensions of evolutionary genomic research.

Florian is the Senior Reviews Editor of Current Biology, and I hope he’ll do a writeup of this conference.

The conference will end with a roundtable on “What more can we do?”. That’s a good question, for journals and popular venues just adore hyped-up findings like Arsenic World, The Epigenetics Revolution, and Ding-Dong: the Selfish Gene is Dead.  I see no solution to the hype problem save an army of science-minded people calling out the hype on social media. If enough of us do it, the journals and popular venues will eventually take notice, as will the authors of hype-y articles.

A picture from The Great Agnostic

December 7, 2013 • 12:33 pm

I’ve been tracking down quotes from Robert G. Ingersoll, the subject of Susan Jacoby’s new book, The Great Agnostic: Robert G. Ingersoll and American Freethought.  I’ve been mightily impressed with the man: he was a strident atheist before it was cool (or uncool) to be strident, and as eloquent as Hitchens.  He was also reputed to be of impeccable charm and character. It would do us all good to read more of him, and realize that New Atheism isn’t the first in-your-face form of godlessless. (I presume that’s one reason Jacoby wrote her book.)

Anyway, checking an e-version of Ingersoll’s 1879 book, The Gods and Other Lectures, I found this as the frontispiece:

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That’s about as strident as you could get for 1879!

And I must include a relevant quote I’ve used before, from Ingersoll’s 1890 essay God in the Constitution:

“We have already compared the benefits of theology and science. When the theologian governed the world, it was covered with huts and hovels for the many, palaces and cathedrals for the few. To nearly all the children of men, reading and writing were unknown arts. The poor were clad in rags and skins—they devoured crusts, and gnawed bones. The day of Science dawned, and the luxuries of a century ago are the necessities of to-day. Men in the middle ranks of life have more of the conveniences and elegancies than the princes and kings of the theological times. But above and over all this, is the development of mind. There is more of value in the brain of an average man of to-day—of a master-mechanic, of a chemist, of a naturalist, of an inventor, than there was in the brain of the world four hundred years ago.

These blessings did not fall from the skies. These benefits did not drop from the outstretched hands of priests. They were not found in cathedrals or behind altars — neither were they searched for with holy candles. They were not discovered by the closed eyes of prayer, nor did they come in answer to superstitious supplication. They are the children of freedom, the gifts of reason, observation and experience — and for them all, man is indebted to man.”

More Egnorance: IDers lie for Jesus again

December 7, 2013 • 8:55 am

Michael Egnor is a regular fixture at the Discovery Institute’s website, Evolution News and Views.  I usually ignore their many attacks on me because Egnor and his pals are a pack of lightweights devoted to promoting God by attacking evolution, and I don’t want to give creationist loons a platform.  But there are two posts I want to highlight because they how far these IDers can twist the truth in the service of attacking evolutionists (and, of course, promoting Jesus or, in Klinghoffer’s case, Yahweh). Many of us know this already, but forgive me for flogging a moribund horse.

When I visited Kentucky a short while ago, I sought out and was photographed at the grave of John T. Scopes, the defendant in the famous “Monkey Trial” held in Dayton, Tennessee in the summer of 1925.  Scopes, the high-school football coach and substitute science teacher, was convicted of violating Tennessee’s “Butler Act,” which prohibited the teaching of human evolution. (Note: the teaching of nonhuman evolution was not forbidden, which shows you what really bothers people.) You probably know that Scopes’s conviction was overturned on a technicality: the judge fixed the fine ($100), but the law specified that fixing a fine over $50 was the duty of the jury, and the Butler act specified a minimum fine of $100.

My host Ben Shelby and I found Scopes’s grave in a cemetery in Paducah (his people were from Kentucky), and on his tombstone was engraved “A man of courage”.  I made the following comment on this site:

The trial was in 1925, so he was only 24 years old at the time. It’s amazing to realize that he was still alive when I was in my twenties. I should have sought him out to shake his hand.

Well, that was enough to give Michael Egnor a case of the vapors, and he put up a post decrying my admiration for Scopes. (These people must monitor my website with a fine-toothed comb!)

As if that weren’t enough (do these people have a day job?), Egnor’s fellow creationist David Klinghoffer chimed in on another post, comparing my “fawning praise” for Scopes (really? fawning?) with my praise for Nelson Mandela, whom I did call a “hero.” (He was, Scopes wasn’t, but Klinghoffer wanted to make the comparison).

But it wasn’t just my so-called “fawning praise” for Scopes that ticked them off, but something worse: Scopes was said to have promoted racism and eugenics! As Egnor said:

Coyne’s hero taught the schoolchildren of Dayton from a textbook with rancid eugenic racist hate, which was part and parcel of evolutionary theory during the first century of Darwinian ascendancy and remains today the subtext of the Darwinian understanding of man. The good folks of Tennessee, and the citizens of many communities across the country, wanted no such venom taught to their children.

Coyne embraces his hero — “a man of courage” — and would have liked to have shaken his hand. Here’s my question to Coyne and other admirers of John Scopes: Do you embrace what Scopes actually taught?

(Note: the Scopes trial was not about racism or eugenics—regardless of whether “the good people of Tennessee” objected to their teaching—but about evolution.)

Klinghoffer agrees with Egnor’s criticisms:

As Dr. Egnor points out, Scopes taught from a biology textbook laced with the most hair-racing racism. Now with the passing of Nelson Mandela, a genuine hero, Coyne turns cluelessly from one embrace to another:

“All men are mortal, but I always hoped Mandela would be the one exception. . .

We all knew he would go soon, but we already have too few heroes among us, and now there’s one fewer.” [JAC: my words]

The sentiment is certainly accurate, though I could do without the sugary prose that somehow makes you want to brush your teeth afterward.

Mandela, pivotal in ending apartheid, is a hero. True. But Scopes — who achieved fame by teaching from a textbook that hailed “Caucasians, represented by the civilized white inhabitants of Europe and America” as the “highest type of all” and recommended European eugenic efforts as a solution to human “parasitism” — is also a hero?

Does Coyne really not see the contradiction?

What I see is a pair of misguided creationists with time on their hands publishing lies and misrepresentations.

Here are the facts:

1. Nowhere did I describe Scopes as my “hero” in that post. What I said about him is printed above. I don’t really see Scopes as a “hero,” for he risked very little in that trial, especially compared to what Mandela risked—and suffered. Scopes did have courage, however.

2. The textbook from which Scopes taught, Civic Biology by George William Hunter, did indeed contain some pretty dreadful racist and eugenicist statements. The link in the previous sentence gives some examples.

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3. That textbook was required for all high-school biology students by the State of Tennessee.  Scopes had no choice about which book to use, and using that one certainly doesn’t show that Scopes shared its sentiments about race and eugenics. Does this mean that every high-school biology teacher in the state agreed with what was in the book? (It is ironic, by the way, that Tennessee, by requiring use of a book that covered human evolution, was requiring its biology teachers to break the law.)

4. Moreover, Scopes wasn’t even the regular biology teacher; he was a substitute teacher who filled in for others. And on the teaching days for which he was tried, he was filling in for the regular biology teacher.

5. Scopes didn’t even appear to teach from the textbook, and it’s questionable whether he taught evolution (or racism or eugenics) at all! Douglas Linder, a law professor at the University of Missouri at Kansas City, and an expert in famous trials, notes in his description of the Scopes Trial:

One of the enduring debates concerning the Scopes trial revolves around whether Scopes ever actually taught the subject of evolution.   George Rappalyea posed the question, holding up a copy of George W. Hunter’s Civic Biology, at Robinson’s drugstore. “You have been teaching ‘em this book?” he asked. Scopes answered, “Yes,” then went on to explain that, while substituting for the regular biology teacher in April 1925, he had assigned his students Hunter’s chapter on evolution.  Illness the next day, however, kept him home and, to his recollection, no class discussion of the evolution materials ever took place.  Scopes, however, remembered teaching the topic in a general way earlier in the same month to his general science students.

Now look what Egnor and Klinghoffer have done. First, since they can’t lay a glove on evolution, they go after an evolutionary biologist—me. But even if I were a miscreant, that would say nothing about the truth of evolution. One could just as well criticize creationism by smearing some of its proponents, like convicted criminal Kent Hovind. Klinghoffer and Egnor demonstrate a principle often noted by Christopher Hitchens: when the facts aren’t on your side, pull out the ad hominems.

Second, they accuse me of characterizing Scopes as my “hero,” which isn’t true.

Then they claim that I have a “hero” who approved of eugenics and racism, one who supposedly taught from a textbook book containing those topics. (The implication, of course, is that I also favor eugenics and racism.) But that’s not true, either. Scopes was neither the regular biology teacher nor a teacher who conveyed lessons from that book.  In fact, it’s not clear how much evolution he taught, anyway—he volunteered to “violate” the Butler Act simply to create a test case.

Finally, there is not an inking of proof that Scopes approved of eugenics and racism, much less taught those topics as they appeared in Civic Biology.

In other words, both Klinghoffer and Egnor have fabricated a pack of lies and misrepresentations in the service of another lie: that I take a racist proponent of eugenics as my hero. Of course I decry racism and eugenics, but note that Scopes might have done so as well!

What a pathetic pair of men Egnor and Klinghoffer are. They have nothing better in their arsenal against evolution than to smear evolutionists in these ridiculous ways.  You’d think I ran over their dog or something. Really, guys, do you think you’re promoting the cause of Intelligent Design in this way? All you’re really doing is making fools of yourselves, and doing magic tricks in front of the fools who follow you.  An apology would be in order, but that’s about as likely as Egnor confessing that he’s finally seen the truth of evolution.

Am I hurt? Hell, no! The Discovery Institute’s opprobrium is music to my ears. But I do detest lying, whether it be in the service of Jesus or Darwin. And what I really think about Egnor’s and Klinghoffer’s stunts is not printable on this family-friendly site.

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Caturday felid trifecta: cats vs. birds, cat vs. d*g, and a love letter to a cat

December 7, 2013 • 7:04 am

Several readers sent me this item, which I thought was touching and also instructive: I didn’t know that Elizabeth Taylor (a great actress and perhaps the most beautiful woman in the history of Hollywood save Ava Gardner), was also a cat lover. The website Letters of Note includes a letter written by Taylor to her lost cat.  The circumstances:

For two months in 1974, as Richard Burton filmed his part in The Klansman, he and his wife, Elizabeth Taylor, moved to California with Cassius, just one of Taylor’s many beloved cats. Sadly, the trip confused Cassius somewhat and he soon went missing, never to return. Taylor wrote the following letter some time after his disappearance.

Picture 1The transcript:

Letter to my Lovely Lost Cat

I see you, my beauty boy, in the reflection of those shining black-brown rocks ahead of me. I see the green o’ thy eyes in every rained, sweated leaf shaking in my eyes.

I remember the sweet smell of your fur against my neck when I was deeply in trouble and how, somehow you made it better — you knew! You knew always when I hurt and you made comfort for me, as I did once for you when you were a broken kitten.

Anyway, I love you Cassius — and thank you for your beauty.

Please come back!

Liz et chat:

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Birds annoying cats. Note how remarkably patient the cats are with animals that could, after all, be noms:

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This cat, a boxing Siamese annoyed by a d*g, is not so patient. Man does that cat have a mean one-two punch!

h/t: Todd, Ginger, Amy, and another reader whose name I’ve forgotten (thanks!)

Hili Dialogue: Saturday

December 7, 2013 • 4:11 am

It is snowing in Dobrzyn, and Hili doesn’t like it. And once again she displaces Emma the D*g.

Hili: We all aspire to happiness or at least some measure of comfort.
A: It’s close to the truth.
Hili: I wonder what is a dog’s definition of comfort?
1483001_10202244298256199_1291270680_nIn Polish:
Hili: Wszyscy dążymy do szczęścia, a przynajmniej do jakiegoś komfortu.
Ja: To prawie prawda.
Hili: Ciekawa jestem jaką definicję komfortu mają psy?