Your Inner Fly: Fighting dipterans share genes with you and me

January 19, 2014 • 10:20 am

Introductory note by JAC: Matthew has produced a terrific post here, and I hope people will read it. The results of this scientific analysis are amazing and the genetic tools required to produce them are breathtaking—tools I couldn’t have imagined were possible when I was a graduate student. If I had one hope for 2014, it would be that more people would read the science posts. (Maybe you do, but just don’t comment on them!) kthxbai

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by Matthew Cobb

In 2007, the genomes of 12 closely-related Drosophila species were published in Nature. This was an important moment because it enabled researchers to look beyond their traditional friend, D. melanogaster, and to study the similarities and differences between the behaviour and genes of ‘the’ fly and those of its relatives, for some species had separated only a million or so years ago, while others were much more distant: up to 40 million years of divergence.

Accompanying the genomes was a thought-provoking review by Drosophila neurobiologist Leslie Vosshall from Rockefeller University. In her article, entitled ‘Into the mind of the fly’, Leslie summarised the varied behavioural studies that had been made on Drosophila, most of them deriving from the work of Seymour Benzer, who was behind the discovery of the first biological clock gene as well as mutations affecting learning. Not only did such complex behaviours and genes exist,  it turned out that they are highly conserved: the same genes control fly clocks that control part of the human biological clock, for example. In other words, you share some really interesting bits of your physiology with a fly.

Leslie concluded her article with this bold statement:

 It now seems possible to approach in the fly more complex behaviours and even emotions, the neurobiological basis of which are not well understood at the genetic or functional level in any animal: sociality, common sense, altruism, empathy, frustration, motivation, hatred, jealousy, peer pressure, and so on. The only a priori limitation to studying any of these traits is the belief that flies can show such emotions and the design of a plausible behavioural paradigm to measure them.

At the time I thought this was fly-neuroscience hubris. But I now think she was probably right – all of our specific genetically-influenced human characters must have some vague predecessor in animals; many of those may have deep evolutionary roots, and may therefore be shared even by quite distant relatives such as flies.

One indication that Leslie was right is a paper that’s just appeared in Cell from one of her ex-students, Kenta Asahina, working in the lab of David Anderson.  Asahina, Anderson and their colleagues have shown that the biochemical basis of aggression in flies appears to involve a neuropeptide that is also involved in aggression in mammals, including humans.

Drosophila flies are normally a pretty peaceful bunch, spending their time hanging around on rotting fruit, mating and so on. But if you give a couple of males a limited amount of food, then they can get very aggressive and apparently territorial, as shown in this neat video from Amber McCartney (it goes on for nearly 4 minutes – you’ll get the idea after 15 seconds or so; at around 2:15 a female turns up, but the guys are initially more interested in beating the crap out of each other than in flirting with the gal, who isn’t up for it anyway).

The aggression is shown primarily by male flies and involves chemical signals – if you create a female fly covered in male pheromones (this is the kind of thing fly scientists love doing) the male treats her aggressively rather than trying to mate with her. The cells that are involved in controlling this behaviour express a gene called fruitless, which is very complex – it has different forms in males and females – and does lots of things to do with sex-specific fly behaviour.

Kenta and his colleagues (most of them from Cal Tech) did a neat experiment; they reasoned that neuropeptides might be involved in controlling aggression in flies, because these substances are also found in the neural circuits that control other complex behaviours. They then took 40 fly lines, representing a total of around 20 neuropeptide genes, and engineered them so that the genes would only work at 29º C (this is also the kind of thing that fly people like doing). They put males together in pairs at eclosion (hatching from the pupal case), and then automatically observed their movement.

On Day 6 they shifted the temperature to 29ºC and observed what happened. As the figure shows, two of these lines expressing a neuropeptide called Tachykinin showed high levels of lunging behaviour (this is a key part of male aggression), suggesting that this neuropeptide is involved in controlling aggression.

Fig1

They then looked at the way the Tachykinin (‘Tk’) gene was expressed in the brains of the flies and found that only a small number of cells in male flies expressed this gene. It turned out that these cells were also specific for the male form of the fruitless gene. This figure shows you the exquisite science neuroanatomists can do these days – the green labels Tk-expressing cells in the fly brain, while the magenta shows the pattern of male fruitless expression (A2, B2).

Fig2

To prove that these cells are actually involved in controlling aggression, they then manipulated the flies so they could turn the Tk on and off only in those specific cells. Sure enough, they found that when the gene was turned on, the flies showed aggressive behaviour.

There’s a whole lot more in the paper, including showing that only aggression was affected, that a mutation in the Tk gene abolished aggression, activating the Tk cells made the flies aggressive and so on, but for the general reader we can proceed to the pièce de résistance. (My apologies to the scientists who did so much work, don’t mean to belittle your effort!)

In the Discussion, the authors highlight that what fly folk call Tachykinin is homologous to what in mammals is called ‘Substance P’, which is involved in controlling aggression in mammals. In other words, the neuropeptide that enables these flies to be aggressive is also found in you and me. The authors go on to make some bold claims for what is an incredibly detailed and well-argued study. Claims that a few years ago I might have dismissed, but now take extremely seriously. I’ve reproduced the final paragraphs here, without the references. Some of it might be hard going, but this is terrific stuff, with potentially massive implications, if they are right:

Among three species of vertebrate Tachykinin neuropeptides, Substance P has been implicated, directly or indirectly, in various forms of aggression, including defensive rage and predatory attack in cats, and intermale aggression in rats. Although not all functions of Substance P are necessarily conserved (such as nociception in mammals and olfactory modulation in the fly), these data suggest that this neuropeptide is broadly involved in the control of agonistic behavior in both vertebrates and invertebrates. They therefore add to the growing list of neuropeptide systems that show a remarkable evolutionary conservation of functions in the regulation of innate “survival behaviors” such as feeding and mating. Biogenic amines also control aggression across phylogeny. However, in the case of serotonin, the directionality of its influence is opposite in flies and humans.

Our findings indicate that studies of agonistic behavior in Drosophila can identify aggression-regulating genes with direct relevance to vertebrates. Interestingly, in humans, the concentration of Substance P-like immunoreactivity in cerebrospinal fluid has been positively correlated with aggressive tendencies in patients with personality disorders. Substance P antagonists have been tested in humans as anxiolytic and antidepressant agents, although they failed to show efficacy. The present findings, taken together with mammalian animal studies, suggest that it may be worthwhile to investigate the potential of these antagonists for reducing violent aggression in humans.

References

Leslie B. Vosshall (2007) Into the mind of a fly Nature 450:193-197 (FREE!)

Kenta Asahina et al. (2014) Tachykinin-Expressing Neurons Control Male-Specific Aggressive Arousal in Drosophila. Cell 156:221-235. (abstract free, article = $$$)

The religious recalcitrance of Americans

January 19, 2014 • 8:26 am

After some effort, I managed to track down the Time Magazine poll mentioned by David Masci in this 2007 Pew Research article, where he said this (my emphasis):

When asked what they would do if scientists were to disprove a particular religious belief, nearly two-thirds (64%) of people say they would continue to hold to what their religion teaches rather than accept the contrary scientific finding, according to the results of an October 2006 Time magazine poll. Indeed, in a May 2007 Gallup poll, only 14% of those who say they do not believe in evolution cite lack of evidence as the main reason underpinning their views; more people cite their belief in Jesus (19%), God (16%) or religion generally (16%) as their reason for rejecting Darwin’s theory.”

I wanted to make sure that poll existed, and I got upset when I went through every issue of Time Magazine from 2006 (not just October) and didn’t find the poll mentioned.  The 64% figure startled me, and I wanted confirmation.

At any rate, Masci was kind enough to dig out the original SRBI/Time poll from that year, which wasn’t published in the magazine. It’s a survey of 1002 Americans, and here are the relevant data. Make of them what you will:

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We’re number 2 :-( and a note on roolz

January 19, 2014 • 6:55 am

As I’ve said, you can never predict which posts will get the most views. for sometimes someone links to something from this site on reddit, or another aggregator site, and all of a sudden we get inundated with views.

Sadly, the stuff that attracts the most attention is never anything I write myself. Rather, it’s cute little pictures, or a new paper about the perfidies of Mother Teresa (a record with 303,739 views in one day), or, in the latest case, a post about a church sign, which yesterday attracted 90,000+ views (about 3.9 times the normal traffic), thanks to reddit and reddit atheism.  Again, for one brief, shining moment we assumed the #2 position among all WordPress sites.  We were second to—yes, you guessed it—”Watts Up With That?”, which permanently holds the #1 spot like a limpet on a rock.

This morning’s rankings:

Screen shot 2014-01-19 at 4.00.44 AM

What’s up, by the way, with the Hamilton School in Aberdeen?

We’ve been #2 once before, and again it was something unusual: a gif of a bacterium sitting on a diatom sitting on an amphipod. In that case, “Watts Up With That” was still #1.

I’m not an ambitious boy, and I don’t want riches, but please, O Ceiling Cat, can I beat “Watts Up With That?” just one time? It would be gravy to be in the #1 spot for just a day, but even better to beat out this popular and execrable climate-change-denialism site.

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On that note let me add a few items about The Roolz. As traffic on the site has increased, the number of nasty, fractious, and obstreperous commenters has increased, along with the number of religious people trying to leave comments that are absolutely insane. I can’t do much to prevent the latter, most of which I trash, but I want to emphasize again that I want discussion on this site to remain courteous. That means that you are not allowed to insult other commenters or call them names.  If I catch you doing that, I will either warn you on the site or send you a private email asking for a public apology.  About 70% of the time the commenter remains obdurate, often sending me an even nastier email (you wouldn’t believe some of those!).  That gets them banned.  If you do apologize, that’s great, and I hope you mean it. But even so you’ll be put on moderation for a while, with each comment needing approval until your “time out” has expired. (That varies in length depending on subsequent behavior.)

Needless to say, one of the worst sins you can commit is to insult Professor Ceiling Cat. That’s equivalent to urinating on his Ceiling, and I won’t have it.  Be respectful to your host, please, who himself tries to remain courteous while looking after all the kittehs.  Do not call me “Coyne” (“Jerry” or “Professor Ceiling Cat” will do fine, thank you), do not tell me that I am writing too much about one topic or too little about another, and please do not accuse me of being disingenuous, hypocritical, and the like. This is just simple civility, but I’m learning that many people, especially under the cover of pseudonymity, abandon all sense of decorum and propriety on the Internet. Behave here as you would behave having a discussion in someone’s home.  You can be animated, passionate, or critical—but do not be nasty.

Finally, please don’t write me asking me to publicize your book, your own website, or your local event. If you want to call my attention to these things, that’s fine, but nothing makes the Cat’s fur bristle more than an email that says, “Would you mind calling attention to my new Awesome Atheist website, because I could use the traffic?” or “I’m sure you’d like to mention the next meeting of our East Worksop Atheist Club.” Cats are independent, you know, and don’t take well to orders.

I am working on codifying these Roolz and putting them as a document on the sidebar, but I’ll have to consult my tech-savvy friends to do that. In the meantime, be nice.

Sunday: Hili dialogue

January 19, 2014 • 5:19 am

This, apparently, comes from Winnie the Pooh (Andrzej is a big fan and knows it all by heart). I, too, read all the books as a kid, but can’t identify the referent. (Reader help appreciated.)

Hili: What is science dealing with?
A: Science is researching everything under the sun.
Hili: And what does it say about God?
A: The more it is looking inside the more He is not there.

(Photo: Sarah)

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In Polish:

Hili: Czym zajmuje się nauka?
Ja: Badaniem mikro i makrokosmosu.
Hili: A co mówi o Bogu?
Ja: Że im bardziej zagląda do środka, tym bardziej Go tam nie ma.

(Photo: Sarah)

The fabulous pom-pom crab!

January 19, 2014 • 1:10 am

By Matthew Cobb

King of gifs (you know how that’s pronounced here, don’t you…) @JohnRHutchinson just tw**ted this fabulous gif of a pom-pom crab. It appears that they pick up sea anemones, which  sting, and wave them around as a form of defence. I wonder if and how that hypothesis has been tested, or if it’s just “obvious”. Malacostracologists, please chip in!

Twitter problem fixed

January 18, 2014 • 5:38 pm

Thanks to technological wizardry of friends, my Twitter problem is resolved. I suspect I’ve been hacked, but (claw on wood) it won’t happen again. We’ve been removing those people I involuntarily “followed” one by one, and they’ll all be gone in a day or two. If you’re one of them, it’s nothing personal! I simply don’t have time to follow anyone on Twitter, as the website is my one social media outlet. (I also use Facebook to publicize my posts, but almost never put anything else there.)

Happy Saturday, and don’t forget the Cat Confessions Contest, which closes in eight days.

Twitter glitch

January 18, 2014 • 4:12 pm

For some reason, connected with nothing I did, I am suddenly “following” people on this website’s Twitter account “evolutionistrue.”  As you may know, I don’t follow anyone, as I don’t have time, and I use Twitter as a device to let people know when there’s a new post.

And if anyone can tell me how to get back to zero people I’m “following” from the number of 900+ who appeared from God knows where, please let me know. I have a sinking feeling that I’ve either been hacked or there’s some bug, and I have to delete all those people I’m following one by one.

Is Jesus back? Nun gives birth—having no idea she was pregnant

January 18, 2014 • 2:21 pm

On Wednesday, in the Italian city of Rieti, a 31-year-old nun experienced severe stomach pains, and went to the hospital. A few hours later she gave birth to a healthy baby boy.

As the Torygraph reports:

The discovery of her pregnancy has embarrassed the Catholic Church in Italy, with the local bishop saying that she will have to leave her convent in Rieti, north of Rome, after breaking her vow of chastity.

“It would be preferable that she now lead a secular life with her baby, away from religious institutions,” said a spokesman for Delio Lucarelli, bishop of Rieti.

The nun, who is from El Salvador, had kept her pregnancy a secret and even as she was being taken to hospital in an ambulance denied that she could be pregnant.

“It’s not possible, I’m a nun,” she told doctors, according to the Italian press.

The nun, who has not been named, had been working in an old people’s home attached to the Campomoro convent near Rieti. She was a member of the Little Disciples of Jesus order.

The convent’s mother superior, Sister Erminia, said: “It seems she was not able to resist temptation.”

The kicker in all this is what she’s calling the kid:

She named the baby boy, who weighed 7.7lbs, Francesco – apparently in tribute to Pope Francis.

What is telling is that the Church isn’t willing to see this as a miracle. After all, the nun is married to Jesus, and made the implicit claim that she was chaste.  If DNA tests don’t turn up a human father, why couldn’t this be the first miracle in the inevitable canonization of Pope Francis?

It seems to me that this is really an advance in rationality, even in the Church: the immediate assumption that that was not a miracle but an unchaste nun, and the Church’s stand that she will have to leave her order because she must have copulated with a human. If that’s the case, why couldn’t you say the same for the “Virgin” Mary?

h/t: Kevin