Why Evolution is True is a blog written by Jerry Coyne, centered on evolution and biology but also dealing with diverse topics like politics, culture, and cats.
I’ve been waiting a while for this special edition of Simon’s Cat to be posted on YouTube. It’s not only the first full-length cartoon (13 minutes), but also, as I recall, the first one in color. For that, and for its content, it gets its own Caturday Felid spot.
Simon’s Cat gets his paw stung by a bee, and then it’s off to the vet for treatment. Cat-owning readers will be familiar with the rest of the drill:
Reader Mark Sturtevant sent some diverse photos from his Ikea Cabinet of Mystery.
About a year ago I had posted pictures showing a few specimens from my “Cabinet of Mystery” (from Ikea!). It is once again time open its glass paneled doors and peer inside for more oddities and curiosities.
We begin with a fossil that I picked up while on a class field trip to the famous Mazon Creek formation in Illinois. This site contains ironstone nodules with numerous fossils from the Carboniferous period. I found it pretty much impossible to split these nodules successfully, but there were many that were already split open by the regional freeze-thaw cycle, revealing whatever there was to reveal. Anyway, this large fossil leaf is from a seed fern known as Neuropteris. I found several of these, plus other kinds of ferns and horsetail fossils. All pretty common. Animal fossils are also known from this site, including some very famous ones. One observant member of our class found a horseshoe crab fossil!
Next we have an ammonite. I had long ago misplaced information about this purchased fossil, but a quick search online identifies it as a Cretaceous species named Discoscaphites. These are famous for their pearlescent surface, which one can see here. I suspect that what is going on is that the outer layers have been removed, revealing the pretty inner layer of the shell.
The next picture is a belemnite shell. Like the ammonites, these were cephalopods with a shell, but this piece is the rear-most tip of a larger shell which was elsewhere quite thin and so not often preserved. When a teenager, I convinced my parents to let me join an extended school-sponsored summer field trip. We hiked and camped through most of the major parks in Wyoming and South Dakota, and at an enormous and isolated hogback ridge formation in Wyoming we came across a huge deposit of belemnite fossils. I would be surprised to learn that kids get to go on field trips like that any more. It was amazing (and at times a little dangerous), but I thought it was an important part of growing up.
Back to some more purchased fossils. Next is a set of Eocene fossil bird footprints that are from the Green River formation in Utah.
Following that, the next fossil appears to be a crane fly, also from the Green River formation.
I like to collect fossils, and the next picture is a mystery fossil that my oldest son had collected when we lived in Flagstaff Arizona. The geology of Flagstaff is a complex. Right in the town you can drive by road cuts containing sandstone layers that date to the Permian and Triassic periods, and at various places there are much older deposits. Anyway, my son picked up this specimen while hiking in the forest in the back of our house. Note that one side is convex and the other is concave, and there are different textures on the two sides. The fossil could be something rather mundane like a shelled animal (Brachiopod?), but I don’t know of any species like this. I am wondering if it is a scute (a kind of bony dermal plate) from a reptile. Phytosaurs were Permian reptiles that were convergent on crocodiles, as shown here, and they had bony scutes. I know there are large bone beds of Phytosaurs just outside of town.
Not all treasures in my Cabinet of Mystery are fossils. The human skull in the next picture is one of the main prizes. I have always called it ‘Uncle Herbert’ for some reason, and I do suspect it to be from a male because of certain craniofacial features like the brow ridges and squarish eye orbits. In any case it was an amazing gift from my very generous parents. They were teachers, and so growing up we always had catalogs from Carolina Biological Supply around the house, and I was always poring through them and bringing up this or that cool thing. There were many Christmas mornings when I would awake to find a special box from CBS sitting under our Xmas tree. These might include things like embalmed animals for dissection, or insects for mounting. But one special morning there was a box that contained… dear Uncle Herbert.
Another item from CBS is shown in the next picture. This is a lump of tar from the famous La Brea tar pits, containing a beetle which I suspect is a species of water scavenger beetle. The La Brea tar pits are a system of tar seeps in the middle of Los Angeles, California. These seeps have been trapping animals and plants of all sorts for tens of thousands of years. Although their more famous victims include numerous saber-toothed cats and mammoths, they will ensnare anything. I don’t know how old this specimen is, but it is supposed to be ancient and the chunk of tar is as light as a feather, not sticky at all, and it smells like a plain rock.
Finally, we finish with a fossil tooth from an Albertosaurus, which is a smaller relative of T. rex. Dinosaurs would regularly shed their teeth and replace them with new ones, and Albertosaur teeth are presumably fairly abundant in some sites as I have seen a lot of these in rock shops.
In honor of the Armistice, there are celebrations or memorials in the US, Poland, New Zealand, France, Belgium, the UK, and the Commonwealth, including New Zealand. It’s also National Sundae Day, even though it’s Saturday.
On this day in 1675, Gottfried Leibniz demonstrated the use of integral calculus as a way to determine the area under the graph y = ƒ(x). Two people were hanged on this day: Nat Turner (1831) for inciting a slave rebellion, and the Australian “bushranger” Ned Kelly, hanged in Melbourne in 1880. I had no idea who Ned Kelly was, but his Wikipedia entry is HUGE. He must be some sort of national icon in Australia. On this day in 1864, Union general William Tecumseh Sherman started burning down Atlanta before beginning his destructive march to the sea. And, of course, on this day in 1918, Germany signed an armistice agreement with the allies in a railroad car in the forest of Compiègne, France. In 1940 Hitler, to humiliate the French, made them sign their surrender in the same railway car at the same location. On November 11, 1921, President Warren Harding dedicated the Tomb of the Unknowns in Arlington National Cemetery. On this day in 1992, the Anglican Church voted to allow women to become priests. We’re still waiting on the Vatican. . . . Finally, in 2004, Nobel Laureate and terrorist Yasser Arafat was confirmed dead by the PLO, with Mahmou Abbas becoming the PLO chairman.
Notables born on this day include Paracelsus (1493), Fyodor Dostoyevesky (1821), Édouard Vuillard (1868), George S. Patton (1885), Rabbit Maranville (1891), Kurt Vonnegut (1922), Barbara Boxer (1940), Demi Moore (1962), and Leonardo DiCaprio (1974). Here are two nice paintings by Vuillard:
Vuillard, Portrait d’Ambroise Duret (and his cat), oil painting, 1912
Note that as per my theory (whch is mine), the cat is not painted at all well, even though Monsieur Duret looks fine. Why can’t artists paint cats?
Vuillard, Jeune fille au chat, 1891
Those who fell asleep on this day (or were forcibly put to sleep) include Nat Turner and Ned Kelly (see above), Søren Kierkegaard (1885), Jerome Kern (1945), Allman Brothers bassist Berry Oakley (1972), and Yasser Arafat (see above).
I am told that Hili has matured so much, and Andrzej and she have developed such a close mutual understanding, that their dialogues will become more obscure to the reader. Malgorzata explained the one below: “Andrzej has something important to discuss with the Editor-in-Chief. But the laughing Editor is not in the mood for any serious talks.”
Yes, this quesadilla filled with candy is real, and it’s on sale at select Taco Bell stores. As Fortune reports:
Taco Bell is bringing its latest food mashup to the U.S.: a quesadilla filled with Kit Kats.
That’s right. Following the chain’s success with the Doritos Locos taco, Taco Bell has rolled out the “Kit Kat Chocoladilla,” a chocolatey creation that packs a flour tortilla with bits of Nestlé’s (NSRGY) wafer bars and melted chocolate instead of cheese or veggies, Brand Eating first reported. The Chocoladilla is being tested at select locations in Wisconsin through mid-November, according to Mashable.
This appears to be a test sale in Wisconsin, so readers should let me know if it’s on sale and still called a “Chocoladilla”. That’s because “ladilla” is Spanish for “crab louse” (but can also be used to refer to someone who’s annoying). Viz:
These 11-year-old conjoined twins, Krista and Tatiana Hogan, are joined at the head, and, not only that, share part of their brains. As The Walrus reports (in a somewhat hyperventilating article), they each have a brain, but there’s a neural bridge between the thalamus of each brain (the part of the brain that relays sensory signals and is important in consciousness). This apparently makes them share each other’s sensations, so that what one sees or tastes is at least partly shared with the other. When one body is tickled, the other twin laughs. There’s even a shared mental connection—some sharing of thoughts, and we can’t conceive of what that’s like. Nobody else in the world, nor any pair of twins, has this kind of cerebral connection.
They weren’t expected to survive, and even if they did they were expected to be in a vegetative state. They’ve defied those expectations, but aren’t in fantastic health: one has heart problems because she pumps blood to her twin’s brain, and they also have epilepsy and slowed intellectual development. Still, they’re doing pretty well given the situation.
Here’s a 45-minute CBC documentary made when the twins were seven: an absolutely fascinating look at a neurological anomaly, but also at the resilience of two girls in the face of an inoperable condition. They’ll be head to head for life. (If one of them dies, the other will follow shortly). It’s also a one-off opportunity to study the transfer of experience, but of course if you were the parent, or the girls, would you want them probed and examined by a bunch of scientists?
As The Walrus says, this raises questions about what “self” means, but that’s a bit of an exaggeration. The real question is “how is one’s sense of being a ‘self’ modified when your brain is connected to another brain?”
This is a great documentary, and if you have a spare 45 minutes, I recommend that you watch it. Seriously. Some might think they’d be grossed out by this, but give it a try. I was heartened and fascinated, and there’s a fair bit of science in there, too.
You’ve probably heard about “zombie ants”: ants that become zombie-like when infected by a certain parasitic fungus. Like many parasites, some fungi can control the behavior of their hosts, and they do this to increase their own fitness, affecting the host’s morphology and behavior to make it more likely that the parasite will pass its genes to the next generation. This is simple natural selection operating on the parasite, but doing so in a way that captivates and fascinates both biologists and laypeople. How can a fungus or worm take over a larger animal and make it do its “will”? (I’m speaking in biological shorthand here.)
One of the iconic examples of such parasitism involves those zombie ants. When a carpenter ant is infected by the parasitic fungus Ophiocoryceps unilateralis(henceforth, “the parasite”), the ant’s behavior eventually changes. The parasite enters the ant through the cuticle, and then begins to grow. After 16-25 days, the fungus makes the ant climb a plant (they nest in the ground), move to a conspicuous location on a plant, and then bite down hard on a plant vein, affixing itself firmly to the vegetation. The ant dies, and the fungus grows a stalk out of the ant, ready to disperse its spores to the ground, where the infection and life cycle will resume when the fungus is encountered by the next unlucky ant.
Here’s what the dead ants with the parasite growing out of them look like:
From Wikipedia: “Ants biting the underside of leaves as a result of infection by O. unilateralis. The top panel shows the whole leaf with the dense surrounding vegetation in the background and the lower panel shows a close up view of dead ant attached to a leaf vein. The stroma of the fungus emerges from the back of the ant’s head and the perithecia, from which spores are produced, grows from one side of this stroma, hence the species epithet. . . Fungus species: Ophiocordyceps unilateralis Ant species: Camponotus leonardi doi:10.1371/journal.pone.0004835.g001
Another photo:
A dead carpenter ant with fungal spores erupting out of its head. (Image: David Hughes/Penn State University) From Gizmodo.
Clearly, the fungus is somehow manipulating the ant’s behavior to facilitate reproduction of the parasite. But how does it do this?
We don’t know exactly in any case (though there are a fair number of cases), but it must involve either growth of the parasite inside the host or chemical manipulation of a host(or both)—presumably in ways that affect the host’s brain. After all, if the brain isn’t affected, how can you modify the host’s behavior?
We now have a better, but still incomplete, idea of what’s going on with zombie ants from work described in a new paper in PNAS by Maridel Fredericksen et al. (reference at bottom and free access; pdf here). What the authors did was infect carpenter ants (Camponotus castaneus) in the laboratory with the “zombie-making” O. unilateralis fungus (as well as with a control fungus that doesn’t create zombie ants but does kill them). Then right when at the crucial moment when ant bites down on the plant, they microdissect that infected ant to see where the fungus was.
This latter procedure was a tour de force, for it involved a complex series of manipulations on a very tiny creature. The ant was dissected tiny bit by tiny bit, and then each bit was treated with immunofluorescent stain that could distinguish between fungus tissue and ant tissue. The authors then developed a computer program to look at the microscopic sections and put them together. This procedure, called “deep learning”, is a huge improvement over it being done by hand—the usual technique. As Gizmodo notes:
Using electron microscopes, the researchers created 3D visualizations to determine location, abundance, and activity of the fungi inside the bodies of the ants. Slices of tissue were taken at a resolution of 50 nanometers, which were captured using a machine that could repeat the slicing and imaging process at a rate of 2,000 times over a 24-hour period. To parse this hideous amount of data, the researchers turned to artificial intelligence, whereby a machine-learning algorithm was taught to differentiate between fungal and ant cells. This allowed the researchers to determine how much of the insect was still ant, and how much of it was converted into the externalized fungus.
What they found was surprising:
1.) First, there was no fungus in the ant’s brain, though it was present throughout the body. This really was a surprise, as everyone expected that the fungus would glom onto the ant’s brain, and that was the way it controlled its behavior. Instead, there was fungus everywhere else in the ant, especially in the muscles. (That was true of the “control” fungus, too, but, surprisingly, the paper gives no information about whether the control fungus was found in the ant’s brain).
Here’s part of a figure showing the ant’s brain (stained in green), and the nearby fungus (red); scale bar is 20 microns. There are a few fungal tracheae in the brain (arrowheads) but nowhere near the degree of intermixing of brain and fungus cells seen in muscles, and there are no fungal hyphae (the filaments of the fungus that conduct and transfer nutrients) in the brain at all, whereas they’re deep into the muscle (see below).
2.) The fungus formed a connecting network of hyphae that attached to and penetrated the ant’s muscles. Here’s an example of the networks of fungi (yellow) surrounding the ant’s muscles (red) from the paper:
(From paper): Three-dimensional reconstructions of fungal networks surrounding muscle fibers. (A) A single fiber of an ant mandible adductor muscle (red) surrounded by 25 connected hyphal bodies (yellow). Connections between cells are visible as short tubes, and many cells have hyphae growing from their ends. Some of these hyphae have grown along and parallel to the muscle fiber (arrowhead in Inset). This reconstruction was created using Avizo software.
What is the fungus doing infiltrating the muscle and forming a network that ramifies widely throughout the ant’s body? The authors posit, and this seems likely, that the fungal hyphae are sucking nutrients from the ant’s muscles and transferring them to other fungal cells not touching the muscles. This may be how the fungus feeds itself and grows throughout the ant. Muscles are rich in mitochondria, which give the ant energy reserves and are good food for the fungus. The authors also observed severe atrophy of the muscle probably connected with the fungal invasion. This muscle infiltration and formation of networks was not seen in the control fungus.
So we have two questions left:
Why does the fungus not infiltrate the brain? We don’t know, but it’s possible that doing that would quickly kill the ant and render it useless for further growth and manipulation of behavior. Further (or in addition), it may be easier to control the ant’s behavior by secreting chemicals into an intact brain than by brute-force physical invasion of the brain. After all, the behavioral manipulation by the fungus is precise: it makes the ant go to a specific exposed position on the plant (see below) and then bite down hard with its mandibles.
So how is the fungus affecting the ant’s behavior? We still don’t know. Clearly the fungal attachment to the muscles is not somehow moving the muscles in a preferred way or controlling the mandibles; rather, the muscle infiltration is a way for the fungus to get the energy it needs to grow and then form the stalk that spreads spores. What is very likely, but remains to be shown, is that the fungus secretes a chemical that somehow affects the intact brain in a way that makes the ant behave like a zombie. The authors do note that metabolite chemicals secreted by the fungus differ when it is near the brain than when it is near the muscle. Not only that, but the behavioral modification is more than just biting: the ant goes to a very specific place before biting, and that directionality somehow has to be produced by the parasite as well. As Wikipedia notes,
An infected ant exhibits irregularly timed full body convulsions that dislodge it to the forest floor. The ant climbs up the stem of a plant and uses its mandibles with abnormal force to secure itself to a leaf vein, leaving dumbbell-shaped marks on it. The ants generally clamp to a leaf’s vein at a mean height of 25.20 ± 2.46 cm above the forest floor, on the northern side of the plant, in an environment with 94–95% humidity and temperatures between 20 and 30 °C (68 and 86 °F). Infections may lead to 20 to 30 dead ants per square meter. “Each time, they are on leaves that are a particular height off the ground and they have bitten into the main vein [of a leaf] before dying.” When the dead ants are moved to other places and positions, further vegetative growth and sporulation either fails to occur or results in undersized and abnormal reproductive structures.]
In other words, the fungus has to direct the dying ant to a specific microenvironment optimal for survival and propagation of the spores.
This adds up to a real tour de force of natural selection: imagine the evolution of a chemical that can make the ant behave in such specific ways! The mind boggles: what were the intermediate steps in the evolution of this kind of host manipulation?
As Matthew emailed me (he found the paper), “What an amazing adaptation of the fungus to make the ant do the things the fungus needs it to do (‘puppet master’ is wrong metaphor because the fungus isn’t the master—natural selection is!)”. It’s stuff like this that keeps the evolutionary biologist—well, at least the ones with imagination—in a constant state of wonder and awe.
Now of course we don’t know the crucial answer: how does the manipulation of behavior actually work. But we know at least that it’s probably chemical rather than physical, and we also know that the parasitic fungus evolved adaptations for sucking nutrients from the ant’s muscles. That’s two steps forward. And the usual ending of scientific papers applies: “More work needs to be done.”
I was talking to my friend Tim last night, and told him I’d come upon a Guardian list of novels that everyone should have read before leaving college, and that the list included Harry Potter and the Philosopher’s Stone (seriously?) as well as Lord of the Rings (a good and entertaining read, but not nearly as worthwhile as Tolstoy, who wasn’t on the list). I can’t find the link now, but so be it.
I’m a sucker for such lists, as from them I’ve found some great books, but they can also include some clunkers. (I have read that Harry Potter book, by the way: an undergrad in my lab and I decided to exchange book recommendations: she’d read a book of my choosing and I’d read one of hers. Her choice for me was Harry Potter, mine for her was D. H. Lawrence’s Sons and Lovers. I read her choice [meh]; she didn’t read mine! I also read Lord of the Rings and The Hobbit in high school, and loved them.)
Tim and I, considering ourselves well read, of course criticized the Guardian‘s choices, and that led us to exchange lists of our favorite 20 works of fiction of the last 200 years. We would each make our own list before reading the other’s. So here are my favorites, which I just jotted down without thinking too much. Tim’s list is below mine, and it’s surprising to see how much coincidence there is. Of course we both went to the same college, and we’ve known each other and discussed books for years, but still . . .
Remember, these are lists of our favorite books, not necessarily the best books, though of course there will be considerable overlap. For example, Tender is the Night is not a perfect book by any means, suffering from a bizarre narrative break in the middle, but the prose and story are lovely, and I love good prose.
My list (not in any particular order)
Dubliners (especially “The Dead”) James Joyce*
The Tin Drum (Gunter Grass)
Native Son (Richard Wright)
A House for Mr. Biswas (V. S. Naipal)*
The Sun Also Rises (Ernest Hemingway)
Anna Karenina (Tolstoy)*
The Adventures of Huckleberry Finn (Mark Twain)*
Middlemarch (George Eliot)
Crime and Punishment (Dostoevsky)
The Remains of the Day (Kazuo Ishiguro)
A Hundred Years of Solitude (Gabriel García Márquez)*
The Heart is a Lonely Hunter (Carson McCullers)
Midnight’s Children (Salman Rushdie)
The Master and Margarita (Mikhail Bulgakov)
Winesburg, Ohio (Sherwood Anderson)
Tender is the Night (F. Scott Fitzgerald)*
The Sound and the Fury (William Faulkner)
The Raj Quartet (Paul Scott; four books, but I’d include the sequel Staying On, which belongs with the others)
Invisible Man (Ralph Ellison)*
Blood Meridian (Cormac McCarthy)
If I could add one more from modern times, it would be Pat Barker’s Regeneration Trilogy. Also, Ishiguro’s Never Let Me Go is a close second to The Remains of the Day. I also note that I chose three works of “magical realism”: the Bulgakov, Garcia Márquez, and Rushdie.
Tim’s List (in alphabetical order by author)
Sonny’s Blues (James Baldwin)
Death Comes for the Archbishop (Willa Cather)
Heart of Darkness (Joseph Conrad)
Invisible Man (Ralph Ellison)
Absalom, Absalom (William Falkner)
Tender Is the Night (F. Scott Fitzgerald)
The Overcoat (Nikolai Gogol)
For Whom the Bell Tolls (Ernest Hemingway)
Their Eyes Were Watching God (Zora Neale Hurston)
The Dead (James Joyce)
The Feast of the Goat (Mario Vargas Llosa)
One Hundred Years of Solitude (Gabriel Garcia Marquez)
Member of the Wedding (Carson McCullers)
Moby-Dick (Herman Melville)
Beloved (Toni Morrison)
A House for Mr. Biswas (V.S. Naipul)
Complete Stories of Flannery O’Connor
The Year of the Death of Ricardo Reis (José Saramago)
Anna Karenina (Leo Tolstoy)
Huckleberry Finn (Mark Twain)
The books we have in common are indicated by asterisks on my list; fully seven of the twenty were shared, and even more authors were shared.
One final note: I had a hard time choosing between Carson McCullers’s books Member of the Wedding and The Heart is a Lonely Hunter. Both are terrific, but Tim and I chose alternatives.
You know what to do now; make your own list (top five, maybe?), criticize or laud our choices, and so on. Clearly, the coincidence of the lists above means that we’ve learned about books either from each other or from our teachers.