Are Komodo dragons venomous?

May 23, 2009 • 11:23 pm

by Greg Mayer

Komodo dragons (Varanus komodoensis) are the world’s largest living lizards, reaching 10 feet in length, and are restricted to the islands of Komodo, Rintja, Padar, and Flores in Indonesia. In a soon to be published paper in the Proceedings of the National Academy of Sciences (abstract), Brian Fry of the University of Melbourne and a cast of thousands ( well not quite– there are only 27 coauthors) report evidence that dragons are venomous. This is not as shocking as it sounds. First, the only previously known venomous lizards, the Gila monster (Heloderma suspectum) and Mexican beaded lizard (Heloderma horridum) are members of the family Helodermatidae, which is part of the superfamily Varanoidea, which, as you can tell by the name also includes the Varanidae, to which the Komodo dragon belongs. Fry and colleagues have argued before that venom is more widespread in lizards (and snakes, too) than traditionally thought. Second, dragon bites have long been known to be nasty things, with death often ensuing, but this was thought to be due to sepsis.

Carl Zimmer has an interesting piece on this in the NY Times, in which he notes that Fry et al. have not convinced everyone about dragons being venomous. He talked to my old friend and colleague Kurt Schwenk (and check out UConn’s E&E dept.’s great website) of the University of Connecticut. Kurt was unimpressed by the evidence presented (I can only get the abstract yet, so can’t really comment myself), and had a wonderful way of putting the argument that venom is not necessary to explain why dragon prey die after being bitten:

I guarantee that if you had a 10-foot lizard jump out of the bushes and rip your guts out, you’d be somewhat still and quiet for a bit, at least until you keeled over from shock and blood loss owing to the fact that your intestines were spread out on the ground in front of you.

For further info on dragons, the late Walter Auffenberg‘s classic monograph on dragons, The Behavioral Ecology of the Komodo Monitor (University Press of Florida, Gainesville, 1981) is a must read.

How the giraffe got its long neck II

May 21, 2009 • 11:58 pm

by Greg Mayer

In a previous post on how giraffes got their long necks, I noted that this was a venerable question in biology. The contrast between a Lamarckian and Darwinian explanation of how giraffes got their long necks has long been a popular example in introductory textbooks. My high school textbook (Biological Sciences Curriculum Study ‘Yellow’ edition, 1968) had it, and W.T. Keeton, in the college text Biological Science (2nd ed., 1972) used it, though calling it “now rather hackneyed”. I did a little checking and found some interesting historical tidbits.

I did not consult Lamarck, but found that Wallace, not Darwin first broached the issue from the natural selection side, in his part of the famed Linnean Society paper of 1858 (all the Darwin/Wallace materials quoted here were quickly located using the marvelous The Complete Works of Charles Darwin Online). Notice that in the following extract Wallace argues that it is a process of selection among variants, with access to food being the selective factor, that drives the evolution of the neck.

The hypothesis of Lamarck—that progressive changes in species have been produced by the attempts of animals to increase the development of their own organs, and thus modify their structure and habits….  Neither did the giraffe acquire its long neck by desiring to reach the foliage of the more lofty shrubs, and constantly stretching its neck for the purpose, but because any varieties which occurred among its antitypes with a longer neck than usual at once secured a fresh range of pasture over the same ground as their shorter-necked companions, and on the first scarcity of food were thereby enabled to outlive them.

A year later, in the first edition of the Origin, Darwin refers not to giraffe’s necks, but to their tails and their neck vertebrae.

The tail of the giraffe looks like an artificially constructed fly-flapper; and it seems at first incredible that this could have been adapted for its present purpose by successive slight modifications, each better and better, for so trifling an object as driving away flies; yet we should pause before being too positive even in this case, for we know that the distribution and existence of cattle and other animals in South America absolutely depends on their power of resisting the attacks of insects: so that individuals which could by any means defend themselves from these small enemies, would be able to range into new pastures and thus gain a great advantage. (p. 195)

And later:

The framework of bones being the same in the hand of a man, wing of a bat, fin of the porpoise, and leg of the horse,—the same number of vertebræ forming the neck of the giraffe and of the elephant,—and innumerable other such facts, at once explain themselves on the theory of descent with slow and slight successive modifications. (p. 479)

The giraffe’s tail is used to illustrate adaptation, or suitability to the conditions of existence, which comes about through the modifying effects of natural selection; the giraffe’s neck, with its seemingly incongruously low number of vertebrae, illustrates the unity of type (the same structures or organs in organisms of varying conditions of existence) which reveals common ancestry.  Thus the giraffe is used to illustrate the two great unexplained phenomena faced by biology prior to Darwin– adaptation and unity of type– and Darwin’s unified explanation for thes phenomena: descent with modification by means of natural selection.  These examples continue throughout all editions of the Origin. But there is no mention of the long neck as a feeding adaptation.

In the third edition of the Origin (1861), in the Historical Sketch, Darwin first mentions the neck as an adaptation for feeding.  He is here explicating Lamarck, correctly noting Lamarck’s two evolutionary mechanisms, the effects of use and disuse (the inheritance of acquired characters, which Darwin, and essentially all his contemporaries, accepted; the later naming of this as ‘Lamarckian’ inheritance is unhistorical), and the innate drive for progressive development.

With respect to the means of modification, he attributed something to the direct action of the physical conditions of life, something to the crossing of already existing forms, and much to use and disuse, that is, to the effects of habit. To this latter agency he seems to attribute all the beautiful adaptations in nature;—such as the long neck of the giraffe for browsing on the branches of trees. But he likewise believed in a law of progressive development; and as all the forms of life thus tended to progress, in order to account for the existence at the present day of very simple productions, he maintained that such forms were now spontaneously generated. (p. xiii)

It is not until the sixth edition of the Origin (1872) that Darwin gives extended consideration to the long neck as an adaptation for feeding, but in response to criticisms by Mivart, not to make a contrast with Lamarck. The problems addressed are how incipient stages of adaptive structures can be selected for, and why, if a trait is adaptive, why don’t all species (or at least all similar species) evolve the trait. Here’s the full discussion (it’s a bit long for a blog, but what the heck).

All Mr. Mivart’s objections will be, or have been, considered in the present volume. The one new point which appears to have struck many readers is, “that natural selection is incompetent to account for the incipient stages of useful structures.” This subject is intimately connected with that of the gradation of characters, often accompanied by a change of function,—for instance, the conversion of a swim-bladder into lungs,—points which were discussed in the last chapter under two headings. Nevertheless, I will here consider in some detail several of the cases advanced by Mr. Mivart, selecting those which are the most illustrative, as want of space prevents me from considering all.

The giraffe, by its lofty stature, much elongated neck, fore-legs, head and tongue, has its whole frame beautifully adapted for browsing on the higher branches of trees. It can thus obtain food beyond the reach of the other Ungulata or hoofed animals inhabiting the same country; and this must be a great advantage to it during dearths. The Niata cattle in S. America show us how small a difference in structure may make, during such periods, a great difference in preserving an animal’s life. These cattle can browse as well as others on grass, but from the projection of the lower jaw they cannot, during the often recurrent droughts, browse on the twigs of trees, reeds, &c., to which food the common cattle and horses are then driven; so that at these times the Niatas perish, if not fed by their owners. Before coming to Mr. Mivart’s objections, it may be well to explain once again how natural selection will act in all ordinary cases. Man has modified some of his animals, without necessarily having attended to special points of structure, by simply preserving and breeding from the fleetest individuals, as with the race-horse and greyhound, or as with the game-cock, by breeding from the victorious birds. So under nature with the nascent giraffe, the individuals which were the highest browsers and were able during dearths to reach even an inch or two above the others, will often have been preserved; for they will have roamed over the whole country in search of food. That the individuals of the same species often differ slightly in the relative lengths of all their parts may be seen in many works of natural history, in which careful measurements are given. These slight proportional differences, due to the laws of growth and variation, are not of the slightest use or importance to most species. But it will have been otherwise with the nascent giraffe, considering its probable habits of life; for those individuals which had some one part or several parts of their bodies rather more elongated than usual, would generally have survived. These will have intercrossed and left offspring, either inheriting the same bodily peculiarities, or with a tendency to vary again in the same manner; whilst the individuals, less favoured in the same respects, will have been the most liable to perish.

We here see that there is no need to separate single pairs, as man does, when he methodically improves a breed: natural selection will preserve and thus separate all the superior individuals, allowing them freely to intercross, and will destroy all the inferior individuals. By this process long-continued, which exactly corresponds with what I have called unconscious selection by man, combined no doubt in a most important manner with the inherited effects of the increased use of parts, it seems to me almost certain that an ordinary hoofed quadruped might be converted into a giraffe.

To this conclusion Mr. Mivart brings forward two objections. One is that the increased size of the body would obviously require an increased supply of food, and he considers it as “very problematical whether the disadvantages thence arising would not, in times of scarcity, more than counterbalance the advantages.” But as the giraffe does actually exist in large numbers in S. Africa, and as some of the largest antelopes in the world, taller than an ox, abound there, why should we doubt that, as far as size is concerned, intermediate gradations could formerly have existed there, subjected as now to severe dearths. Assuredly the being able to reach, at each stage of increased size, to a supply of food, left untouched by the other hoofed quadrupeds of the country, would have been of some advantage to the nascent giraffe. Nor must we overlook the fact, that increased bulk would act as a protection against almost all beasts of prey excepting the lion; and against this animal, its tall neck,—and the taller the better,—would, as Mr. Chauncey Wright has remarked, serve as a watch-tower. It is from this cause, as Sir S. Baker remarks, that no animal is more difficult to stalk than the giraffe. This animal also uses its long neck as a means of offence or defence, by violently swinging its head armed with stump-like horns. The preservation of each species can rarely be determined by any one advantage, but by the union of all, great and small.

Mr. Mivart then asks (and this is his second objection), if natural selection be so potent, and if high browsing be so great an advantage, why has not any other hoofed quadruped acquired a long neck and lofty stature, besides the giraffe, and, in a lesser degree, the camel, guanaco, and macrauchenia? Or, again, why has not anymember of the group acquired a long proboscis? With respect to S. Africa, which was formerly inhabited by numerous herds of the giraffe, the answer is not difficult, and can best be given by an illustration. In every meadow in England in which trees grow, we see the lower branches trimmed or planed to an exact level by the browsing of the horses or cattle; and what advantage would it be, for instance, to sheep, if kept there, to acquire slightly longer necks? In every district some one kind of animal will almost certainly be able to browse higher than the others; and it is almost equally certain that this one kind alone could have its neck elongated for this purpose, through natural selection and the effects of increased use. In S. Africa the competition for browsing on the higher branches of the acacias and other trees must be between giraffe and giraffe, and not with the other ungulate animals.

Why, in other quarters of the world, various animals belonging to this same order have not acquired either an elongated neck or a proboscis, cannot be distinctly answered; but it is as unreasonable to expect a distinct answer to such a question, as why some event in the history of mankind did not occur in one country, whilst it did in another. We are ignorant with respect to the conditions which determine the numbers and range of each species; and we cannot even conjecture what changes of structure would be favourable to its increase in some new country. We can, however, see in a general manner that various causes might have interfered with the development of a long neck or proboscis. To reach the foliage at a considerable height (without climbing, for which hoofed animals are singularly ill-constructed) implies greatly increased bulk of body; and we know that some areas support singularly few large quadrupeds, for instance S. America, though it is so luxuriant; whilst S. Africa abounds with them to an unparalleled degree. Why this should be so, we do not know; nor why the later tertiary periods should have been much more favourable for their existence than the present time. Whatever the causes may have been, we can see that certain districts and times would have been much more favourable than others for the development of so large a quadruped as the giraffe. (pp. 177-179)

So, it is Wallace rather than Darwin, who has most clearly contrasted the variational mechanism of natural selection (some individuals reproduce more than others, changing the average composition of the next generation) with Lamarck’s transformational mechanism (each individual changes).  And one last point: an alert reader recommends the following as a current argument for the hypothesis of long necks as a feeding adaptation: CAMERON, E. & TOIT, J. T. du. 2007. Winning by a neck: tall giraffes avoid competing with shorter browsers. American Naturalist 169: 130-5 (abstract).

Darwinius: what’s at issue?

May 21, 2009 • 3:10 pm

by Greg Mayer

I’m leaving in a few days for Costa Rica, and Jerry is back, so this will be my last post on Darwinius, at least for awhile. At least three different issues have been debated in the blogosphere concerning “Ida“: 1) What are her phylogenetic relationships; 2) Was the media campaign excessive; and 3) Has the name been published?

Darwinius on toast1) What are her phylogenetic relationships? This is the most important one, because it is, as John Maynard Smith once put it, about the world, and not about names. Is Darwinius close to the common ancestor of monkeys, apes, and men, or is it a member of the group that includes lemurs and lorises? The question has been raised and discussed most forcefully by Brian Switek at Laelaps, who thinks the evidence presented for relationship to monkeys and apes is weak. To my mind (and I’m not a specialist in primates or even mammals), he’s got a strong point, and we can look forward to a publication by Brian (or some other critic) on this issue.

2) Was the media campaign excessive? The short answer is yes. I expressed some uneasiness over the media campaign here at WEIT, and many others have documented the extravagant claims and consequent media misunderstandings further. See especially what Carl Zimmer had at the Loom, Brian at Laelaps, and PZ Myers at Pharyngula. But by far the best (or at least funniest) take on this was Ed Yong’s satirical evisceration of the inflated media campaign at Not Exactly Rocket Science, from which I have been kindly permitted to reproduce the by now iconic “Darwinius on Toast” above. There are many unresolved questions concerning how to present science to the public, and differing views concerning how aggressive a media campaign should be, but this one was at least one step beyond.

3) Has the name been published? This is the most technical issue, and is about names (rather than the world), but it’s attracted the most attention. See the posts here at WEIT, the Loom (and here), the Lancelet, and Laelaps, including the ensuing commentary by, among others, Henry Gee, Martin Brazeau, and Larry Witmer. There are several issues, and I’ll treat them very briefly (since this is a blog post, and not a paper in the Bulletin of Zoological Nomenclature!).  For reference, The International Code is online here.

3a) Has the name Darwinius masillae been published (in the sense of the Code) in Plosone? No. Many people have noted that Art. 8.6 requires non-paper works to be deposited in 5 major libraries, and that a statement to this effect must be included in the paper. No such statement is in the paper. More importantly, although it has been noted in only one comment I’ve seen, Art. 9 goes on to specify that nothing distributed by the web counts as being published. The non-paper works envisioned in Art. 8 are things like CDs, not web postings. So, the various remedies proposed, such as reposting on Plosone with the requisite statement, would not work. To be published, a non-Web work must be made: paper, CD, DVD (the latter two requiring the fulfillment of the 5 major libraries rule), or something else which satisfies Arts. 8 and 9.

3ai) Can the name be made available by publishing a short paper (on paper) with a bibliographic reference to the Plosone posting? No, because availability by bibliographic reference must be by reference to a published work (Art. 13.1.2), and anything on the Web is not published (Art. 9.8).

3b) Has the name been published elsewhere? I hope not, but fear it may have been. I pointed out that the various newspaper articles may count as publication, because they meet the various criteria for publication (obtainability, simultaneity, etc.; Art. 8), and also contain 1) the name, and 2) are “accompanied by a description or definition that states in words characters that are purported to differentiate the taxon” (Art. 13.11), and even follow Recommendation 13A: “a summary of the characters that differentiate the new nominal taxon from related or similar taxa.” Many newspaper articles, in addition to a general description, included explicit differentia– incisors, grooming toes– from related taxa, thus providing a diagnosis.

3bi) Can newspapers provide a public and permanent scientific record? In my post, I considered that the newspaper articles might be discounted, because perhaps they had not been issued “for the purpose of providing a public and permanent scientific record” (Art. 8.1.1). Some commenters have taken the position that this is self-evidently the case, but it’s not crystal clear to me.  The Code has always been loath to mandate specific formats of publication, specifying rather general properties (availability, simultaneity, identity, etc.) that a variety of formats might fulfill.  Historically, a huge variety of things have counted as publications (although no newspaper examples come to mind). Some newspapers have science sections, some are “papers of record”; I think the spirit of the Code is to approach each case on its individual merits. That is why the Code urges authors and editors to avoid anything that might make the situation murky, but it does so through recommendations (see my previous post for the specific recommendations).

3bii) Doesn’t the Code try to avoid “accidental” publication? Yes it does, as several commentators have pointed out. It has added meeting and symposium abstracts to the list of formats that are not permissible (Art. 9.9) to help avoid what the Code calls “unintentional publication”; but newspapers, as such, are not mentioned. The Code also now requires that the intention to establish a new name be explicit (Art. 16.1). This article is intended to prevent new names, especially a replacement name (nomen novum) to be introduced without mention, en passant if you will. Unfortunately, the newspaper articles make it absolutely clear that a new nominal taxon has been discovered and is being given a new name, and that this is the intention of the authors (on which, see next paragraph).  The Daily Mail article even uses the word “christened”. The Code urges authors to use “sp. nov.” or some other appropriate indication (Rec. 16A), but, again, does not require it. The Code recommends that any appearance of a new name in a work prior to its intended publication be accompanied by a disclaimer, making the new name unavailable (Art. 8.2 and Rec. 8D). The Daily Mail article contains the phrase “a scientific study to be published”: this might be taken to be such a disclaimer, and while it’s not as clear as one might want, it’s perhaps the most straightforward way of discounting the Daily Mail article. Such phrases may (or may not) appear in the other newspaper articles.

3biii) If it has been published elsewhere, who is the author of the name? The Code provides that when it is clear from the contents of a publication that the name and the conditions that make it available other than publication (i.e. the description or diagnosis) are the work of a person(s) other than the author of the publication, then the author of the name is the other person (Art. 50.1.1). In this case, the newspaper articles make clear that the name and its description were provided by someone else, many mentioning Jorn Hurum and Phil Gingerich. They (or whoever is mentioned in the earliest article published) are thus the authors.  This is a good thing, because it gives credit to at least some of the people actually involved in the work. The newspaper reporter would not be the author of the name.

To summarize the question of publication, the name has not been published in Plosone, but it may have been published in a newspaper. I hope the latter is not the case, and perhaps the Commission could issue a clarifying opinion (following an appropriate application) on the status of names published in newspapers (the problem may be distinguishing newspapers from newsletters from cheaply printed bulletins, and so on).

There are some other issues that have been discussed– the merits of paper vs. the web, the nature of peer review– but these go well beyond the particulars of Darwinius, although it might provide a case study for some of these issues. But one of the take home lessons here is that the recommendations of the Code should be taken to heart, and authors and editors should ensure that works affecting nomenclature are “self-evidently published within the meaning of the Code“(Rec. 8B), and that new names should not appear in works prior to their intended publication, or, if they do, they should “contain a disclaimer (see Article 8.2), so that new names published for the first time therein do not enter zoological nomenclature unintentionally and pre-empt intended publication in another work” (Rec. 8D).

Update. While I was writing this, Carl Zimmer got a reply from the Executive Secretary of the ICZN. She confirms that posting on Plosone does not make a name nomenclaturally available. The issue of the newspaper publication was not addressed; I’m not sure if Carl asked about this. I’m leaning myself toward the idea that inclusion of the statement that the study is going to appear somewhere else could be construed as a disclaimer, thus avoiding newspaper publication of the name (I’m still not sure that all newspaper articles included such a statement).

Update 2. Carl Zimmer at the Loom has a nice account of the PR run-up to the press conference, which he titles “Science Held Hostage“. And, also from Carl, Plosone has today printed a 50 copy paper edition. If we can dismiss the newspaper versions (which, as I indicate in my first update, I think we can because they can be plausibly interpreted to have a disclaimer), then the name is now published with the intended authorship; the date of publication is 21 May 2009 (not 19 May, which is when it was posted to the web). Carl also succinctly explains why the nomenclatural rules are necessary:

To those not steeped in species, genera, suborders and suprafamilies, all of these bylaws and codes may trigger vertigo. But keeping the world’s biodiversity in order is not for the faint of heart. With 1.8 million species on the books, and tens of thousands of new ones being added every year, taxonomists need an intricate set of rules to keep it all straight. The fact that taxonomists share a set of rules, no matter how intricate, was one of the great advances in the history of biology.

Daniel Hauser and mother flee to Mexico

May 21, 2009 • 8:24 am

Daniel Hauser, the poor 13-year-old kid who has treatable lymphoma, but whose parents won’t let him get treatment because of their faith-based objections, has apparently fled toward Mexico with his mother.  This after they fled a court-ordered treatment of chemotherapy, and, if they refused to comply, removal from his parents’ care and placement in a foster home.

They may be seeking quack cures, such as laetrile, in Mexico.  Warrants have been issued for his mother, Colleen.

It has recently come to light that Daniel, who has been home-schooled, is illiterate —  at the age of 13!!!!  What does this say about his parents’ real concern for him, or about his own ability to understand what he is refusing?

He is being murdered, slowly, in the cause of faith.  If his mother is caught and the delay has caused Daniel’s death, she should be tried for murder.  But of course the consideration of “faith” will mitigate any punishment she receives.

His mother’s behavior is evil, pure and simple. Daniel does not deserve this.  Is this one of those evils that God permits in the world to achieve a greater good? If so, what is the greater good?

Join the Reason Project

May 21, 2009 • 7:11 am

Under the inspiration of Sam Harris, a nonprofit organization called The Reason Project has been formed under the trusteeship of Sam, his wife Annaka, and Jai Lakshman.  The website can be accessed here, and the aims are these:

The Reason Project is a 501(c)(3) nonprofit foundation devoted to spreading scientific knowledge and secular values in society. Drawing on the talents of the most prominent and creative thinkers across a wide range of disciplines, The Reason Project seeks to encourage critical thinking and wise public policy through a variety of interrelated projects. The foundation will convene conferences, produce films, sponsor scientific studies and opinion polls, publish original research, award grants to other charitable organizations, and offer material support to religious dissidents and public intellectuals — all with the purpose of eroding the influence of dogmatism, superstition, and bigotry in our world.

While the foundation is devoted to fostering critical thinking generally, we believe that religious ideas require a special focus. Both science and the arts are built upon cultures of vigorous self-criticism; religious discourse is not. As a result, unwarranted religious beliefs still reign unchallenged in almost every society on earth—dividing humanity from itself, inflaming conflict, preventing wise public policy, and diverting scarce resources. One of the primary goals of The Reason Project is to change this increasingly unhealthy status quo.

We are always looking for creative ways to involve the community in our efforts. If you would like to contribute to the work of The Reason Project, please fill out a volunteer application. We encourage you to consider the work of The Reason Project your own.

There is a nice advisory board, including luminaries like Sam, Christopher Hitchens, Richard Dawkins, Daniel Dennett, Salman Rushdie, Ian McEwan, Steve Pinker, Ayaan Hirsi Ali, and one non-luminary, moi.   Our goal is not to constanty attack or wipe out religion, but to spread rationality (granted, the spread of one is inimical to the existence of the other).  But have a look at the website and do volunteer or join up if you’re interested.  There are some cool projects listed, and more in the offing.

rp_logo

How to subscribe to this website

May 21, 2009 • 5:13 am

At last we have (I think) fixed the bugs in how to subscribe.

On the bottom of the right-hand menu under “Meta” is a link called “Entries RSS.” That will allow you to subscribe using various readers including Google, Yahoo or Live Bookmarks.

I am told this by the woman who designed this website (Kalliopi Monoyios, the artist for my book). Please let me know if this doesn’t work.

Has the name Darwinius masillae been published? And if so, by who?

May 20, 2009 • 1:27 pm

by Greg Mayer

In a previous post on the hype surrounding the online posting of a paper on ‘Ida’, the Eocene primate from the Messel Lagerstatte, I noted that the

from Hurun et al. 2009. Plosone. www.plosone.org
from Franzen et al. 2009. Plosone. http://www.plosone.org

authors had made a nomenclatural faux pas in allowing the name and a description to be published before their paper appeared, thus making the authorship and date of publication of the name murky. At Laelaps, cromercrox (comment 35 here and comment 16 here), and at the Loom, Martin Brazeau and Larry Witmer (comments 27 & 29) have also noted nomenclatural problems, since online posting does not constitute publication under the International Code of Zoological Nomenclature, unless copies “have been deposited in 5 major publicly accessible libraries which are identified by name in the work itself”, (ICZN 8.6), which didn’t happen. As posted by Plosone, the paper is not published for nomenclatural purposes.

My concern was not that the name was unpublished, but that it had already been published, in one or more of the newspapers or perhaps even magazines that covered the pre-press conference hoopla. In the Code, Article 8 defines publication, Articles 10 and 11 cover general conditions of availability of a name, and Article 13 gives the particulars for names published after 1930 (the rules are stricter after 1930). The requirements may be summarized by saying that a proper new name must be published (sensu Article 8), and must “be accompanied by a description or definition that states in words characters that are purported to differentiate the taxon” (ICZN 13.1.1). I fear these requirements have been met by some of the pre-press conference articles.

The earliest one I have found is the one in the Daily Mail from May 10 (there may be earlier ones– I haven’t looked very hard). (I also don’t have a paper copy, and am assuming the web article appeared in the paper.  If it didn’t, I could illustrate the exact same points for the New York Times, for which I do have paper copies.) In the article, by Sharon Churcher, the name appears:

Christened Darwinius masillae, it belonged to an extinct group of primates which lived in rainforests.

It also includes characters that are purported to differentiate the taxon:

The study’s authors insist that the fossil can’t be a lemur because it lacks two features: the ‘toothcomb’, a set of lower front teeth used to groom fur; and ‘toilet claws’, toes on the hind feet used for scratching.

The Mail is also mass produced in identical copies obtainable for free or by purchase, publicly available, and permanently archived in many libraries. So it looks like the name has been published.  The one possible out is that you could argue that the Mail isn’t issued for the purpose of providing a scientific record, but purposes are slippery things. Does a newspaper with a science section (which is of course quite purposeful) meet the requirement, but perhaps one without doesn’t? I don’t know. That’s why it’s murky. It is to avoid murkiness that the Code makes Recommendation 8B:

Authors and publishers are strongly urged to ensure that a new scientific name or nomenclatural act is first published in a work printed on paper.

also Recommendation 8D:

Authors, editors and publishers have a responsibility to ensure that works containing new names, nomenclatural acts, or information likely to affect nomenclature are self-evidently published within the meaning of the Code. Editors and publishers should ensure that works contain the date of publication, and information about where they may be obtained. (emphasis added)

and Recommendation 8E:

Editors and publishers should avoid including new names and the information that might appear to make the names available, or new nomenclatural acts, in works that are not issued for public and permanent scientific record (such as pre-symposium abstracts, or notices of papers to be delivered at a meeting). They should ensure that such documents contain a disclaimer (see Article 8.2), so that new names published for the first time therein do not enter zoological nomenclature unintentionally and pre-empt intended publication in another work. (emphasis added)

But it looks to me like the Mail (or the Times, or whoever published it first) is the first valid publication of the name. The Code provides that the author of a name need not be the author of the work:

However, if it is clear from the contents that some person other than an author of the work is alone responsible both for the name or act and for satisfying the criteria of availability other than actual publication, then that other person is the author of the name or act. If the identity of that other person is not explicit in the work itself, then the author is deemed to be the person who publishes the work. (ICZN 50.1.1; emphasis added)

Jorn Hurum and Phil Gingerich are mentioned in the article as people who did the work, with Hurum given precedence.  So what’s the proper citation of this new taxon? It’s

Darwinius masillae Hurum and Gingerich in Churcher 2009.

Contest: Name a truth revealed by faith

May 20, 2009 • 11:43 am

I’m sure you can tell I’m back by the title above.  I’ll be here sporadically until next Tuesday, as I have to do the day job as well as visiting friends.  In the meantime, here’s a contest.  The winner gets the same prize as in the last contest: a copy of WEIT, autographed as you choose.  Warning: there may be no winner in this contest.

Here goes.  In reading the accommodationist literature of the National Academy of Sciences, the NCSE, the NAS, and theologians like John Haught, John Polkinghorne, etc., I constantly hear that “faith and science are two different ways of understanding the world; each gives us access to different truths.”

Using the Oxford English Dictionary definition of truth given below, please name one truth about the world and/or universe that has been arrived at by faith alone, could not be arrived at by secular reason or science, and that is true in that it is in principle verifiable by all people.

OED:   Truth:  Conformity with fact; agreement with reality

NB:  I don’t mean “truth” as “Joe believes in Yahweh”.  That is of course a truth about a person’s belief, but not about the world or universe; and it isn’t arrived at by faith alone, but by observation.  The same holds for statements like “God is good.”

ADDENDUM May 21:  Moral prescriptions are not truths, although they can become truths if they are obeyed.  Thus Lord Kitchener came close when he gave the Koranic statement below, which HAS SINCE BECOME a PARTIAL truth (it’s not true that you always get killed if you blaspheme Islam; depends on how and where) because the Qur’anic injunction was obeyed.  Thus, “Do unto others as you would have them do unto you, “is not something that was, when it was uttered, in agreement with reality (nor is it now!)  When a mom tells her son “Eat your vegetables,” that is not a truth as defined above. It is a COMMAND.

Here are some examples of such truths:

“There are those of you standing here who will not taste death before the Son of Man comes into his kingdom.”  (Something that Jesus said:  he would return before some people who heard him died.)  Sadly, that one was false.

Any reliable prediction about the future gained through faith:  predictions of second comings that gives dates (as above), world affairs, stock market gyrations, world wars with times and details, etc.

Recounting of past lives in an ACCURATE way giving verifiable details that could not have been known to the person who uttered them.

The stuff below about washing your hands before eating lest ye be afflicted with small deadly animals.