Readers’ wildlife photos

August 10, 2014 • 3:46 am

John Chardine sent some lovely pictures of Semipalmated Sandpipers, and even some scientific references! Here are his notes:

One of the most spectacular yet little known wildlife spectacles in North America is the massing of 100,000s of the NA endemic Semipalmated Sandpiper (Calidris pusilla) on the shores of the upper Bay of Fundy in the fall. This occurs about 10km from my house. They come here to feed on Corophium volutator, an amphipod, which lives in the Bay of Fundy mud. The birds breed in the high Arctic and are on their way south to overwinter in Surinam, French Guiana and Brazil. The birds arrive weighing about 20 grams and double their mass in about 2-3 weeks feeding on the Corophium. This is the gas in their tank, which they use for a non-stop flight to northeast South America, taking them just 4 days to complete.
I find all of this amazing, including the short four-day flight from Canada to South America! Imagine the evolution behind that long-distance migration (as in all birds that make trips like that.)
First, here’s the Bay of Fundy so you can see where they foregather:
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You can see John’s other photos at his website.
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This is what an individual looks like- quite a bit smaller than an American Robin:
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A resource like this attracts avian predators such as the Peregrine Falcon (Falco peregrinus):
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A few refs:
Hicklin, P.W. 1987. The migration of shorebirds in the Bay of Fundy. Wilson Bulletin 99: 540-570.
 
Webber, J.-M. 2009. The physiology of long-distance migration: extending the limits of endurance metabolism. J. Exp. Biol. 212: 593-597.
 
Gratto-Trevor, C., R.I. Morrison, D. Mizrahi, D. B. Lank, P. Hicklin, and A.L. Spaans. 2012. Migratory connectivity of Semipalmated Sandpipers: winter distribution and migration routes of breeding populations.. Waterbirds 35: 83-95.
MacDonald, E.C., M.G. Ginn, and D.J. Hamilton. 2012. Variability in foraging behavior and implications for diet breadth among Semipalmated Sandpipers staging in the upper Bay of Fundy. Condor 114: 135-144.

Sunday: Hili dialogue

August 10, 2014 • 2:32 am
A: Hili do you hear that? The church bells are ringing for morning Mass.
Hili: I can’t take Communion because an hour ago I ate a mouse, so my stomach’s not empty, and I didn’t go to confession, either.
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In Polish:
Ja: Hili, słyszysz, w kościele dzwonią na poranną mszę.
Hili: Nie mogę iść do komunii, bo godzinę temu zjadłam myszkę i ani nie jestem na czczo, ani się nie spowiadałam.

The perils of ISIS

August 9, 2014 • 2:47 pm

VICE News is a renegade news organization that has done some great documentaries (their pieces on North Korea were amazing, and scary as hell). They’re now running a five-part story on “The Islamic State”, formerly known as ISIS. Two parts are up, and they’re frightening, with on-the-spot reporting (I don’t know how they manage to get permission to film stuff like this).

The first part, called  “The Spread of the Caliphate,” has the notes below. I’ll put up the second part tomorrow. This is the world we’d live in if these extremists got their way. Do watch: it’s only nine minutes long.

The Islamic State, a hardline Sunni jihadist group that formerly had ties to al Qaeda, has conquered large swathes of Iraq and Syria. Previously known as the Islamic State of Iraq and Syria (ISIS), the group has announced their intention to reestablish the caliphate and declared their leader, the shadowy Abu Bakr al-Baghdadi, as the caliph.

Flush with cash and US weapons seized during recent advances in Iraq, the Islamic State’s expansion shows no sign of slowing down. In the first week of August alone, Islamic State fighters have taken over new areas in northern Iraq, encroaching on Kurdish territory and sending Christians and other minorities fleeing as reports of massacres emerged.

. . . VICE News reporter Medyan Dairieh spent three weeks embedded with the Islamic State, gaining unprecedented access to the group in Iraq and Syria as the first and only journalist to document its inner workings. In part one, Dairieh heads to the frontline in Raqqa, where Islamic State fighters are laying siege to the Syrian Army’s division 17 base.

This is pure Islamic hegemony, and it’s not a reaction to Western “colonialism.” It’s the pure desire to establish an Sunni Islamic state under sharia law, and most of the people they’re killing are other Muslims. But all non-Sunnis are “apostates,” and are executed en masse.

 

h/t: Alberto

I haz logos!

August 9, 2014 • 11:29 am

1 In teh beginz is teh meow, and teh meow sez “Oh hai Ceiling Cat” and teh meow iz teh Ceiling Cat.
2 Teh meow an teh Ceiling Cat iz teh bests frenz in teh begins.
3 Him maeks alls teh cookies; no cookies iz maed wifout him.
4 Him haz teh liefs, an becuz ov teh liefs teh doodz sez “Oh hay lite.”
5 Teh lite iz pwns teh darks, but teh darks iz liek “Wtf.”     —From the LOLCat Bible

Reader Diana MacPherson is going to misread the title as Greek and then get all confused. Be that as it may, I wanted to extend thanks to several readers for their generosity in making me personal logos, along the lines of the logos of really famous scientists I showed yesterday. Two of my own were given as links in the comments, and one came by email. They all deserve public display, and I love them all. (Can you spot the common element?)

Note: I didn’t ask for logos, these were simply acts of artistic kindness.

First, from reader Jente, who got in both cats and speciation in Drosophila:

Jente

And from reader M. Janello, who worked my name into a phylogeny of the domestic cat’s closest relatives:

M. Janello

Finally, from reader “List of X” (the “E” is great):

List of X

Finally, last but not least, thanks also to reader Al B., who, as he’s in the food industry, sent me three pounds of shelled and unshelled almonds for my squirrels. They’re already nomming them like crazy.  Those squirrels eat better than I do!

Our letter to the New York Times criticizing Nicholas Wade’s book on race

August 9, 2014 • 8:34 am

Sunday’s New York Times Book Review (already up) features a letter signed by 139 population geneticists, including myself. It is, in essence, a group of scientists objecting en masse to Nicholas Wade’s shoddy treatment of race and evolution in his new book A Troublesome Inheritance: Genes, Race, and Human History. 

The book was about the genetics of ethnic and cultural differences, and while it made a valid point that ethnic groups do show small but significant genetic differences across the globe, there was no evidence for Wade’s main thesis: that differences in behavior among groups, and in the disparate societies they construct, are based on genetic differences. While that might in principle be true, we simply have no evidence for that conclusion, and it was irresponsible of Wade to suggest that such evidence existed.

I was asked to review Wade’s book for a major magazine, but after reading it became so dispirited that I simply didn’t have the stomach to eviscerate it (pardon the pun). But Allen Orr did a good job in the New York Review of Books; and it was telling that even the Times’s own review, by David Dobbs, was pretty critical. (The Times Book Review is infamous for going easy on books by the paper’s own writers, and Wade has written for the paper for donkey’s years.)

At any rate, I’ve put the letter below (link is here), and the list of 139 signatories is here.  I thank the organizers of this venture—which truly was like herding cats—for compiling a list of almost every population and evolutionary geneticist you can think of, and getting nearly all of them to sign. A statement by such a big and influential group of the very people who work on evolutionary genetics—many in humans, some of whose work was cited by Wade—is surely a severe indictment of Wade’s book and scientific acumen.

The letter:

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The five  main signatories given above are those who did the heavy lifting, while the rest of us read the letter, made minor suggestions, and signed it.

I’ve been informed that both Science and Nature have written small features about the letter.  The one in Science is called “Geneticists decry book on race and evolution,” and, like the one in Nature, is free.  Some excerpts:

The letter was spearheaded by five population geneticists who had informally discussed the book at conferences, says co-organizer Rasmus Nielsen of the University of California, Berkeley. “There was a feeling that our research had been hijacked by Wade to promote his ideological agenda,” Nielsen says. “The outrage … was palpable.” Molly Przeworski of Columbia University, another organizer, says the group “tried to contact population geneticists whose work had been cited by Wade.” They had no trouble getting signatures, racking up 100 within the first week, she says.

The letter organizers and the editors of the Book Review kept the letter under embargo until its publication today and declined to make it available to Wade for an immediate response. [JAC: he has responded; see below.] But in previous ripostes to the book’s critics, most notably in a 19 June Huffington Post article titled“ Five Critics Say You Shouldn’t Read This ‘Dangerous’ Book,” Wade charged that his critics were “indoctrinated in the social-science creed that prohibits any role for evolution in human affairs” and contended that the book’s central argument “has not been challenged by any serious scientist.”

Letter organizers say they hope to demonstrate that the opposite is true. For example, Sarah Tishkoff of the University of Pennsylvania says she signed the letter because “[m]y own research was used as scientific proof of concepts such as there being between three and five races.” Tishkoff says that her work on the genetics of diverse African populations does not support this claim. Adds David Reich of Harvard University: “Our findings do not even provide a hint of support in favor of Wade’s guesswork.”

Yeah, right! All 139 of us, with diverse views on politics and diverse backgrounds, have been “indoctrinated in the social-science creed that prohibits any role for evolution in human affairs.” What kind of person would say something so fatuous, especially because few of us even have anything to do with the social sciences?

Indeed,  Tishkoff and her team has provided one of the best examples of how evolution played a significant role in human affairs. Populations of humans in Africa that are “pastoral” (i.e., raised sheep and cows for dairy products) evolved the ability to keep digesting the milk sugar lactose after it was normally turned off after childhood in non-pastoral populations. (Early humans didn’t drink milk after weaning, so there was no need to make an expensive enzyme to digest it after you no longer drink it.) Her group even showed that this evolution happened about 8,000-10,000 years ago (it’s described in WEIT), identified the mutations keeping the enzyme turned on, and showed that “turned-on” mutation had a significant selective advantage: allowing up to 10% more offspring than those from people lacking the mutation. (That is a big  evolutionary advantage that can cause rapid change.) This is a splendid example of “gene-culture” coevolution, whereby human cultural practices can affect our genetic constitution.

Ergo, Wade’s claim that we’re all of warped by the social sciences to the point where we’d deny the role of evolution in human affairs is simply a stupid claim. This is the last-ditch defense of a man who has no scientific arguments in favor of his hypothesis: when cornered, just question your critics’ objectivity.

The Science piece also ends with a response issued by Wade, which you can find as a separate pdf file here. I won’t duplicate the whole thing, but you can get a sense of it from its beginning:

This letter is driven by politics, not science. I am confident that most of the signatories have not read my book and are responding to a slanted summary devised by the organizers. . . I would urge all the geneticists who signed the letter, several of whom I count as friends, to now read my book and judge to what extent, if any, their condemnation was justified.

I wouldn’t be so sure about that, Mr. Wade! Don’t underestimate scientists’ desires to read  popular books about their field, if for no other reason than to see if our work is represented accurately. In my case, I read the damn thing twice to review it—an experience I wouldn’t want to repeat.

The piece in Nature is called “Geneticists say that popular book misrepresents research on human evolution.”  A few excerpts:

. . .  the letter — signed by a who’s who of population genetics and human evolution researchers, and to be published in the 10 August New York Times — represents a rare unified statement from scientists in the field and includes many whose work was cited by Wade. “It’s just a measure of how unified people are in their disdain for what was done with the field,” says Michael Eisen, a geneticist at the University of California, Berkeley, who co-drafted the letter.

“Wade juxtaposes an incomplete and inaccurate explanation of our research on human genetic differences with speculation that recent natural selection has led to worldwide differences in I.Q. test results, political institutions and economic development. We reject Wade’s implication that our findings substantiate his guesswork. They do not,” states the letter, which is a response to a critical review of the book published in the New York Times.

Several signatories explain how Wade misquoted or misrepresented their findings. Here’s just one, from Graham Coop:

For instance, in making the argument that populations outside of Africa experienced more evolutionary adaptations known as ‘selective sweeps’ than Africans did, Wade quotes a 2002 paper by Coop, in which his team wrote: “A plausible explanation is that humans experienced many novel selective pressures as they spread out of Africa into new habitats and cooler climates … Hence there may have been more sustained selective pressure on non-Africans for novel phenotypes.”

But Coop notes that Wade omitted key caveats, including the statement that African populations may have actually experienced more selective sweeps than non-Africans, but which the researchers missed for technical reasons. “While Wade is obviously welcome to choose his quotes and observations, he consistently seems to ignore the caveats and cautions people lay out in their papers when they do not suit his ends,” Coop says.

And Sarah, whose team did the work on lactose tolerance, damns the book in just a few words (I’ve bolded the money quote):

Tishkoff also acknowledges that natural selection has created biological differences that vary with geography. For example, her team discovered mutations that allows some African populations to digest lactose. But she scoffs at the idea, proposed by Wade, that natural selection has shaped cognitive and behavioural differences between populations around the world. “We don’t have any strong candidates for playing a role in behaviour,” she says.

But she and the other letter signers are most riled by what, they feel, is Wade’s contention that his book is an objective account of their research. “He’s claiming to be a spokesperson for the science and, no, he’s not,” she says.

What is the upshot? As far as the science is concerned, all of the signatories, I think, would agree that evolution has indeed played a significant role in human morphology and biochemistry, producing population differences that have adaptive significance. Differences among groups in skin color and lactose tolerance, for instance, are certainly due to natural selection, though for skin color the story is not as clear as it once seemed (some say darker skin evolved to prevent neural tube defects, for instance, rather than UV-induced melanomas). And the marked differences in physical appearance between groups may have resulted from sexual selection, though that’s pure speculation.

What we do know is that most genes don’t show striking frequency differences among groups, and that “races” are delineated by combining information from many genes, each of which shows relatively small differences among populations. (I’ll add once again that there is no unanimity on how many “races” there are, which is really a semantic question. What we know is simply that populations show genetic differences that correlate with their geographic location.) The genetic information we have, however, is sufficient to give us an idea of the evolutionary history of humans: when they left Africa, when they colonized the New World, where (in some cases) a European can find her ancestors. It’s these genetic differences that, combined, are used by firms like 23andMe to tell you about your ancestry.

But what is even more speculative is Wade’s thesis that behavioral differences between groups, and thus the societies they construct, are based on genetic differences produced by natural selection. Perhaps that is true, but we don’t have a scintilla of evidence for it right now. And we know that those societal and cultural differences can change quite rapidly—much faster than can be explained by natural selection. Perhaps we’ve experienced genetic evolution producing inter-group differences in behavior, but we’ve surely had tons of nongenetic cultural evolution. (Take a look at the penchant for “Hello Kitty” in Japan. That is not based on genes.) For Wade to write a whole book resting on this speculative house of cards—the idea that genes and natural selection are everything in explaining culture—is simply bad popular science.

Wade is fighting back with the only tool he has—ad hominem arguments. But it won’t work, for we simply don’t have the data supporting his thesis.He’ll look very foolish if he, a journalist, continues to claim that he is representing the data correctly, while 139 population geneticists are all wrong. It is Wade’s lack of supporting data that got all of us heated up enough to go public with our criticisms.

Wade should be deeply embarrassed, but, as we know, people are loath to admit that they’re wrong—or that they’ve simply made stuff up to support their pet theory. In his recalcitrance and his propensity for making up stories, Wade resembles a theologian more than a science journalist.

 

h/t: Graham and Molly for keeping me updated.

 

 

Caturday felid: Gus gets his breakfast, and then tea, and two bonus photos

August 9, 2014 • 5:52 am

Professor Ceiling Cat is quite ill today: I’ve been diagnosed with viral bronchitis,wheezing like a steam engine, and I should be home in bed. I will repair there shortly. Given my debilitated condition, don’t expect a whole lot today. Fortunately, though, I wrote most of today’s posts yesterday. Here’s the Caturday Felid, which I pride myself on never having missed in over four years.

Reader Taskin owns Gus, the Earless Cat who, I maintain, is the Whitest Cat on Earth.  As I noted when introducing Gus on this website, he lost his ears via frostbite when it was -40° (same in both F and C) and he was caught in a live trap. (He almost lost his tail, too.) Now he’s a sweet moggie, and, when outdoors, wears a harness mandated by local laws in the part of Canada where Gus lives.

I have two short videos of Gus to show today. The first involves a very strange device for feeding cats (a “ball dispenser”), which, when you think about it, is actually a pretty good invention. Taskin’s notes:

Gus eats quite enthusiastically. We divide his breakfast into three just to slow him down a bit.  He gets half a can of wet food divided in two portions, then he gets some dry food from this ball dispenser.  I should have sent this vid during the World Cup! Gus vs Messi?

My vet friend gave it to me, as her cat couldn’t figure it out.  For Gus, we use it to slow him down but I think it’s main idea is the exercise.  There is also the added bonus that your floor gets cleaned!

And. . . “Gus gets afternoon tea.” Yes, I’m told that’s really tea (with milk, of course) that Gus is slurping

Finally, two pictures of Gus. He likes to sit on the highest spot in his backyard, inspecting his domain:

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And sometimes, like all cats, he sniffs the air, but always with great dignity:

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Tell me, can a cat be any whiter than that?

Well, perhaps this one, sent by reader Richard with the title, “Cat cloud pareidolia!” The attached note said:

My daughter and I beheld this on eastern Long Island. Ceiling Cat!

Praise his Felinity, o my brethren! For surely this beats even the Miracle of Fatima!

Ceiling Cat

Finally, reader Grania sent me an adorable tw**t from Foyle’s bookstore, celebrating World Cat Day with a photo of author Edward Gorey blissed out with cats:

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The one on his chest reminds me of Hili. . .

Readers’ wildlife photos

August 9, 2014 • 3:59 am

I have a backlog of readers’ photos, so other people who have sent in photos are in the queue. And there are some good ones to come.

Reader Diana MacPherson sent a blue jay, and, as always, speculated about the animal’s mood:

This cute, fluffy fellow (Cyanocitta cristata) stopped by, only to be disappointed that the chipmunk had hoovered up all the extra seeds left on the deck.

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From reader Stephen Barnard in Idaho, who is busy photographing hummingbirds and nighthawks, we get “Rufous in repose”:

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“Yet another rufous”:

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This one was labeled “Hummer attack,” with the note,

People were speculating in the comments about a hummingbird attack, à la Hitchcock’s The Birds. Be afraid. Be very afraid. They’re practicing.

Those tiny feet look like they could inflict some damage!

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And one called simply “Yet another nighthawk”. This one looks hungry.

Barnard

 

Saturday: Hili dialogue

August 9, 2014 • 2:54 am

I’m told that a moment after this picture was snapped, Hili smacked Cyrus with her paw and drove him off the couch. It’s a d*g’s life!

Cyrus: You see, we can lie here together.
Hili: Actually, no, but I will allow you to use your sofa when neither I myself nor Jerry is on it.

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In Polish:

Cyrus: Widzisz, możemy tu razem leżeć.
Hili: Nie, ale pozwalam ci korzystać z twojej sofy, kiedy nie ma na niej ani mnie, ani Jerrego.