Nicholas Wade writes a shamefully ignorant review of Bill Nye’s new evolution book

January 9, 2015 • 1:21 pm

For a long time I’ve thought that many of the senior science writers of the New York Times have outlived their usefulness. It might not be a function of age, but simply poor quality journalism. Regardless, the Times could use a serious shake-up in its science section.

Happily, one of their senior writers, Nicholas Wade, retired in 2012, but he still writes occasionally for the paper, and he recently published a shamefully bigoted and ignorant book on human races, A Troublesome Inheritance: Genes, Race and Human History (see the critical reviews in the Times itself, as well as in the New York Review of Books by my first student, Allen Orr).

And in the December 22 Wall Street Journal, Wade once again shows his failure to grasp my own field in a review of Bill Nye’s new book on the evidence for evolution, Undeniable: Evolution and the Science of Creation.  Wade’s review, called “Bill Nye, the Darwin Guy“, is deficient on a number of counts. I’ll highlight three (Wade’s piece is short):

1. What Wade considers the “most direct” and “most undeniable” evidence for evolution is dubious.  Curiously, Wade touts that evidence as some molecular data on gene substitutions:

Mr. Nye writes briskly and accessibly. He favors short, sound-bitey sentences. He is good on the geological and fossil evidence for evolution, reflecting his background in the physical sciences, but devotes less attention to changes in DNA, which furnish the most direct evidence of evolution. A recent paper in the journal PLOS Genetics, for instance, describes the seven DNA mutations that occurred over the past 90 million years in the gene that specifies the light-detecting protein of the retina. These mutations shifted the protein’s sensitivity from ultraviolet to blue, the first step in adapting a nocturnal animal to daytime vision and in generating the three-color vision of the human eye. Such insights into nature’s actual programming language are surely the most undeniable part of evolution at work.

I haven’t read the PLoS Genetics paper, but I’ve been told that it involves using mutation-making technology to alter visual proteins, and then seeing which amino acids that have changed also alter the perception of different wavelengths of light.

But that kind of stuff has been going on for a long time, and it’s hardly “direct”. While it does support natural selection, it’s somewhat inferential and, more important, could be dismissed by creationists as simply showing “microevolution.” If you want direct evidence of natural selection producing microevolution, why not use the many observations we have of selection operating in the wild, most famously the Grants’ work on the Galápagos finches? Isn’t that actually more direct than looking at protein changes that have occurred over millions of time. Or how about the formation of new species of plants that we’ve seen occur in the last 50 years? Or the changes in lactose tolerance that have occurred in pastoral populations (those that keep animals for milk) in the last 10,000 years? What, exactly, does Wade mean by “direct”?

Further, why aren’t changes in fossils, showing both trait changes and the evolution of new “kinds” (e.g., amphibians from fish, birds from dinosaurs, land-dwelling artiodactyls into whales, etc. etc. etc.) just as direct as (and even more undeniable than) looking at historical changes in proteins? Or all the evidence from embryology, vestigial organs, and biogeography that I adduce in WEIT? Why isn’t that just as direct  and undeniable as looking at changes in molecules that separate species? In fact, one could make the case that showing adaptive difference in protein function among species, as the PLoS Genetics authors probably did, don’t really count as decisive evidence for evolution. After all, couldn’t those protein differences have been put there by God? We weren’t there to see them happen, after all.

But one can’t make such a Goddy explanation for evidence like the fossil record or biogeography, and that’s why I downplayed protein-sequence evidence in my book. I was looking for the more undeniable evidence—stuff that creationists couldn’t easily counter. At any rate, Wade, excited by molecular biology, fails to realize that the case he cites might not be the most undeniable and direct evidence for evolution after all—and it could even be said to comport with creationism.

2. Wade sees a serious scientific problem in the supposedly short time during which life originated.  

Mr. Nye’s analysis also glosses over bristling perplexity. He says that there are a billion years between the Earth’s formation 4.5 billion years ago and the first fossil evidence of life, plenty of time for the chemical evolution of the first living cells. But this fact is long outdated. A heavy meteorite bombardment some 3.9 billion years ago probably sterilized the planet, yet the first possible chemical evidence of life appears in rocks some 3.8 billion years old. This leaves startlingly little time for the first living cells to have evolved. Reconstruction of the chemical steps by which they did so is a daunting and so far unsolved problem. Mr. Nye might have done better to concede as much.

As we’ll see below, Wade almost seems to feel that there is something problematic in the neo-Darwinian theory of evolution that might render it wrong. Abiogenesis—the origin of life from nonlife—is something that he, along with creationists, sees as such a problem. But the paragraph above is misleading. “Sterilizing the planet” means “killing everything alive on Earth.” While that might have happened, it didn’t mean that the chemical precursors of life would be eradicated. Also, there is controversy about whether that meteorite bombardment had the effects he said it did, or even when it occurred. We know that indubitable evidence for life appears about 3.5 billion years ago (I don’t trust his 3.8-billion-year figure), so that gives about half a billion years for the first cell (a bacterium) to appear. Is that really “startlingly little time”? Has Wade made any models that show it’s an unrealistic time? It’s 500,000,000 years, which is pretty long, and if the precursor chemicals were there beforehand, the time for the origin of life becomes even longer.

Wade also doesn’t mention that the “living cells” he mentions are prokaryotic cells like bacteria, lacking a nucleus and much of the chemical and structural complexity of “true” eukaryotic cells, which didn’t appear until 1.6 billion years ago—2.3 billion years after the “sterilization”. What Wade sees as a daunting problem isn’t an unsuperable problem. Yes, it’s unsolved, but there are many things about evolution that we don’t understand, like what proto-bats looked like. What does Wade want Nye to concede: that we don’t yet understand the origin of life? Fine, then, concede it, but add that we’re making great strides in solving that problem.

3. Wade suggests a compromise between evolutionists and creationists which is simply insane. This is the most infuriating part of his review. Here’s what Wade says will bring amity between the two groups (my emphasis):

Mr. Nye’s fusillade of facts won’t budge them an inch. Isn’t there some more effective way of persuading fundamentalists to desist from opposing the teaching of evolution? If the two sides were willing to negotiate, it would be easy enough to devise a treaty that each could interpret as it wished. In the case of teaching evolution in schools, scientists would concede that evolution is a theory, which indeed it is. Fundamentalists might then be willing to let their children be taught evolution, telling them it is “just a theory.” Evolution, of course, is no casual surmise but a theory in the solemn scientific sense, a grand explanatory system that accounts for a vast range of phenomena and is in turn supported by them. Like all scientific theories, however, it is not an absolute, final truth because theories are always subject to change and emendation.

Yeah, like that suggestion is going to get fundamentalists to agree to the teaching of evolution! Note to Wade: creationists aren’t stupid enough to buy your little plan. They don’t want evolution taught as the only theory that explains the origin and diversity of life, however that theory is characterized.

Further, scientists have already “conceded” (as Wade puts it) that evolution is a theory. But it’s not only a theory, for it’s so well supported by the data that, as I show in WEIT, it’s also regarded as a fact. (What I mean by “evolution” here are these five tenets: genetic change over time, populational change that is not instantaneous, speciation, common ancestry of all species, and natural selection as the cause of apparent design.)  Will creationists really allow the scientific notion of “theory”, as well as a summary of the mountains of evidence that show evolution to be not just a theory but a scientific truth, to be taught to their kids?

Yes, there are some conceivable observations that could invalidate evolution, but we’ve had over 150 years to find them, with creationists working furiously on that job, and no such observations have appeared. To say that evolution is “always subject to change and emendation” is like saying that “the fact that DNA is a double helix, viruses cause Ebola, the Earth goes around the Sun, and the formula of water is H2O” are all theories “subject to change and emendation”. The fact is that some “theories” are highly unlikely to change because the evidence supporting them is wickedly strong, and to claim that they are somehow shaky or dubious is misleading. I would never countenance saying that any of these scientific notions are “just theories,” for the word “just,” as Wade knows well, implies that the evidence supporting them is somehow shaky.

Wade goes on to fulminate about the dogmatism of evolutionists, and touts the uncertainty of evolutionary biology by using the example of group selection, which, he says, is undecided and therefore makes all of evolution appear as “just a theory.” But group selection is a modern add-on to evolutionary biology, and it’s an unsubstantiated hypothesis. Group selection is not a theory in Wade’s sense, something “that accounts for a vast range of phenomena and is in turn supported by them.” It accounts for no phenomena and there are no observations that require us to accept group selection. To say that evolution is “just a theory” because we haven’t settled the question of group selection is like saying that modern particle physics is “just a theory” because string theory is sitting out there as an unresolved problem.

At the end, Wade reiterates his brilliant suggestion for a pact between evolutionists and creationists:

If popularizers like Mr. Nye could allow that the theory of evolution is a theory, not an absolute truth or dogma, they might stand a better chance of getting the fundamentalists out of the science classroom.

Sorry, Mr. Wade, but we already allow that. No observation in science is an “absolute truth or dogma,” but some things are so likely to be true that you’d bet your house on them. One of those things is evolution. In any vernacular sense of the word, evolution is simply true—as true as the fact that DNA is normally a double helix and a normal water molecule has two atoms of hydrogen and one of oxygen.

Wade’s suggestion is ludicrous and, in the end, shows that he really doesn’t understand the nature of science and scientific truth. Nor does he have the slightest idea of how creationists really behave. They’ll no sooner accept his compromise then they’ll admit that there’s no God. After this piece, and Wade’s egregious book A Troublesome Inheritance, the man’s Official Science Writer™ Card should be revoked.

Charlie Hebdo suspects killed in police raid

January 9, 2015 • 10:46 am

According to my CNN news feed:

The Kouachi brothers have been killed in an operation by security forces, the mayor of Othis, France, Bernard Corneille, told CNN. Police have said Cherif Kouachi, 32, and Said Kouachi, 34, were suspects in Wednesday’s Charlie Hebdo massacre in Paris.

And from the New York Times:

French police on Friday killed the two brothers suspected of murdering 12 people at a Paris newspaper on Wednesday and freed his hostage unharmed, the authorities said. The police launched a simultaneous raid on a kosher supermarket in Paris where an alleged associate of the brothers was holding an unnamed number of hostages. At least some of hostages escaped unharmed, according to the police.

Shortly after 5 p.m., explosions and gunfire were heard at a printing plant outside of Paris where the two brothers were holding a single hostage. The brothers were killed in the assault, police officials said.

There was no way those two were going to be captured and stand trial.  I only hope the hostage is safe; there is no word on that.

And won’t the brothers be surprised when they don’t get their virgins post mortem. Oh, wait. . . .  It’s always galled me that those who believe in the afterlife—and a post tomorrow will show how numerous they are in the U.S.—will never find out they were wrong.

Troy University chancellor issues notapology for promoting religion to students and faculty

January 9, 2015 • 9:13 am

On January 2 I wrote a short piece about how Jack Hawkins, the chancellor (i.e., president) of Troy University, a public university in Alabama, sent a 90-second video (below) to all the students and faculty of his university. As the Telegraph reported, the email was meant to be

. . . a “reminder” of what [Hawkins] called the “blessings” of American democracy – and its vulnerability to secularisation.

Here’s the short video circulated by Hawkins. It was originally put up on YouTube by Brigham Young University’s School of Law, and features features Clayton Christianson, a professor at Harvard’s School of Business:

Hawkins’s promulgation of that video is a blatant violation of the U.S. Constitution’s First Amendment, which forbids public officials (Hawkins is one) from proselytizing for any religion—or for religion as a whole. The video clearly promotes religion and warns of the dangers to American democracy of “secularization.”

Reader Jerry (not me) wrote a letter of complaint to Troy University and received a copy of following email, written by Hawkins, from Andy Ellis, Troy’s director of University relations.  Jerry forwarded Hawkins’s email to me, and I’ve put it below, bolding the weasel words:

Dear Trojans:

As we begin 2015, I welcome you back to campus and I look forward to another year of teaching, scholarship and service. In its evolution as Alabama’s international university, Troy University has become Alabama’s most diverse institution. Students come to us from more than 70 countries, represent all segments of the global community, speak more than 80 languages and they are people of many faiths. We honor their spiritual commitments and we emphasize the importance of tolerance and acceptance of other cultures and beliefs.

The recent New Year’s message I shared with the university community was not intended to offend. It was intended to encourage recipients to embrace the year ahead and to stimulate thought and discussion as to “why” America appears to be challenged at home and abroad.

Of course it wasn’t intended to offend! It was intended to tout religion!

It is regretful my message was found offensive by some due to their assumption it was based upon my intent to promote religion. Nowhere in my personal message did I mention religion. It is also ironic the genesis of the video message narrated by Harvard professor Clay Christensen was an observation made by a visiting scholar from China—a Marxist economist spending time at Harvard as a Fulbright scholar.

There we have the musteline phrases. Hawkins didn’t say he erred, or shouldn’t have sent out the video, but simply expressed “regret” that some found his actions distasteful.  That’s the classic notapology. And Hawkins’s claim that the promotion of religion involved an observation from a Marxist economist does not in the least de-fang that video as a vehicle for faith.

The email goes on:

The Marxist economist concluded that American democracy has worked because the historic role of religion as a cornerstone of our society leads most Americans to “choose to obey the law.” Dr. Christensen expressed concern that as the influence of religion wanes in America, our nation will be left without institutions to teach this valuable lesson.

American higher education values academic freedom and free speech. It also holds dear its role as offering a marketplace of ideas for this country and the world. Those ideas should span a broad spectrum—even if segments of our society are offended by the views and observations of those with whom they disagree. In the end it is truth we seek as a university community.

As Chancellor of Troy University I have the obligation to share information with students, faculty, staff and alumni which I deem helpful in building a stronger community. In sharing the New Year’s message for 2015, information was presented which I believe will be helpful to all of us. Thus, regardless of your religion or political persuasion, I encourage all Trojans to work together as we address problems of concern to our state, nation and world.  Happy New Year!

Unfortunately, Chancellor Hawkins seems to misunderstand the notions of academic freedom and free speech. Free speech does not give public officials the right to force religion, religious tenets, or atheism on their employees and students. The courts have already decided that in the case of Bishop v. Aronov (ironically, at the University of Alabama), where a professor was told he couldn’t use  his class in exercise physiology to promote his religious views.

Hawkins has no obligation to share the promotion of religion with his students, regardless of whether he thinks it helps build a “stronger community.” In fact, he has an obligation not to. The American Atheists have demanded an apology and retraction from Hawkins, but it looks as if they aren’t going to get it. I have no idea whether a lawsuit is in the works.

It would be salutary if all the officials of Alabama and Georgia’s public universities were required to take a workshop on the First Amendment.

Another attack in Paris: gunman holds hostages in kosher supermarket

January 9, 2015 • 7:27 am

I feel more like a news feed these days than a website writer, but I wanted to report another armed attack in Paris in case it’s part of a concerted terrorist effort. According to the Guardian, which has a live feed on the situation, a gunman is holding hostages in eastern Paris. Here’s the Reuters feed as reported by the Guardian.  From what appears below, it seems to be another extremist Muslim operation related to the Charlie Hebdo murders (my emphasis in the report); and the fact that it occurred at a kosher supermarket substantiates that:

Several people were taken hostage at a kosher supermarket in eastern Paris on Friday after a shootout involving a man armed with two guns, a police source said.

There were unconfirmed local media reports that the man was the same as the one suspected of killing a policewoman in a southern suburb of Paris on Thursday.

A police source had told Reuters earlier he was a member of the same jihadist group as the two suspects in Wednesday’s attack at weekly newspaper Charlie Hebdo.

The exact number of hostages was unclear. Local media spoke of at least five. The police source said the man was equipped with automatic weapons.

Police immediately cordoned off the area and a helicopter was flying overhead. Local media said Interior Minister Bernard Cazeneuve was rushing to the scene.

This report of religiously-motivated terrorism may be wrong, but if it’s true, I feel sorry for the beleaguered citizens of Paris, which seems likely to have been singled out for jihadist operations. I suspect other European countries are next, especially those with large Muslim populations.

Readers’ wildlife photographs

January 9, 2015 • 7:19 am

My mailbox, and the daily selection of readers’ photos, show that birds are by far the most popular beast to photograph. I guess that’s because they’re ubiquitous, colorful, and easy to spot (though often not easy to shoot). Yesterday, reader Joe Dickinson sent snaps of egrets and a heron:

A couple of weeks ago, an extreme low tide coincided almost exactly with sunset.  I caught Snowy Egrets (Egretta thula) illuminated by the setting sun and silhouetted  against the twilight sky down by Pleasure Point in Santa Cruz, CA.  Sadly, I missed the “money shot” – two egrets contesting a prime roosting site in a wonderful aerial ballet (could not find the focus fast enough).

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Today, by the Santa Cruz small boat harbor, I had a nice look at a Great Blue Heron (Ardea hernias).

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And reader Diana MacPherson sent juncos on Jan. 6L

Here are some cute pictures of Dark-Eyed Juncos (Junco hyemalis) I took yesterday and this morning as they gobbled up the seeds on the deck. In some of the pictures, the junco resembles a penguin with its round, white belly!

Junco with seed in beak:

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 Penguin-esque Junco seems to embarrassed by his penguinness:

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Penguin-y Junco looks up – you need to keep an eye out for hawks!

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Junco throws up snow while foraging for seeds:

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Charlie Hebdo suspects boxed in, swear to die as “martyrs”

January 9, 2015 • 5:29 am

Just two quick items from this morning’s news

1. The New York Times reports that both suspects have been located and surrounded in a town near Charles de Gaulle airport outside of Paris:

French security forces have surrounded a town northeast of Paris where the two suspects in Wednesday’s terrorist attack at the satirical newspaper Charlie Hebdo appear to be barricaded at a printing business in an office building with at least one hostage, the authorities said.

Earlier, the police said the suspects had stolen a car and exchanged automatic-weapons fire with the police.

2. And this just came in from my CNN email news feed:

The two suspects in the Charlie Hebdo attack spoke to police by phone and said they wanted to die as martyrs, French lawmaker Yves Albarello told a TV station.

Albarello is the local member of parliament for the district where a police operation is taking place.

I suspect that “dying as a martyr” involves not suicide, but a glorious death in a gun battle with police. Let’s hope they capture the suspects alive and that no police are killed during that operation. France has no death penalty, so I’d prefer to see these killers spend the rest of their young lives in jail than expire thinking they’re going to get those virgins in Paradise.

Friday: Hili dialogue

January 9, 2015 • 5:19 am

Well, it may be cold where you are, but I doubt it’s as cold as Chicago. The temperature yesterday when I awoke, which will be the same as today, was -6° F (-21°C), and with the wind it will feel like -20°F today (-29°C). I broke out my balaclava to prevent my face from freezing on the ten-minute walk to work, something I do about once a year. But tomorrow we’ll have a balmy 16°F (-9°C), so it will be positively tropical.  I heard yesterday that parts of southern Canada were colder than Antarctica!

It must be a sign of my dotage that I write about the weather (do I dare to eat a peach?), but I’m really not that bothered by the cold except, like yesterday, when it’s so extreme that it hurts your face a lot to be outside.  I’m told, however, that it’s mild enough in Dobrzyn for Hili to go outside for an hour or more. And there the Furry Princess of Poland is philosophizing, but in a solipsistic way:

Hili: Without cats there would be no puppeteers.
A: Why do you think not?
Hili: Someone must have watched a cat and seen how fine it is to pull strings.

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In Polish:
Hili: Bez kotów nie było by kukiełkarzy.
Ja: Dlaczego tak sądzisz?
Hili: Musieli nas podglądać i zobaczyć jak wspaniale jest pociągać za sznurki.

CBC wimps out on showing the Charlie Hebdo cartoons

January 8, 2015 • 4:57 pm

You can judge the honesty and commitment to free speech of a journalist or newspaper by whether or not they’ll publish the Charlie Hebdo cartoons in a relevant article. If they do, they’re showing what they must show to help readers understand what so offended the Muslim killers. If they don’t, they’re cowardly, afraid that they’ll suffer the same fate as the Charlie Hebdo staff. As Ayaan Hirsi Ali said, now is the time for every paper and outlet to publish those cartoons.

But, joining the cowardly BBC and Torygraph, Jennifer McGuire, editor-in-chief and general manager of the CBC (Canadian Broadcasting Corporation) News online, explains why they didn’t publish any of the cartoons. It’s not a convincing defense. Here’s the relevant part of her defense, called “To publish or not to publish?

News editors around the world grappled with the same dilemma yesterday: to show or not to show the controversial Charlie Hebdo cartoons linked to the mass murder in Paris.

At CBC News, we opted on the side of discretion [JAC: AKA “fear”]: to show some of these incendiary cartoons, but hold back from showing the ones most likely to offend Muslims because they depicted the Prophet Muhammad.

We had a great deal of company in making that decision, as organizations such as CNN and the BBC adopted a similar approach.

Others, such as The National Post, made a different choice, and made a point of publishing the cartoons.

If you spent any time on social media yesterday, you’d think that both choices represented some sort of declaration of war: if you published, you were obviously against Islam; if you didn’t, you were obviously against freedom of speech – or at the very least, a censoring coward.

Sorry to let the rabble-rousers on both sides down, but the truth is that neither is the case.

You can be a fierce devotee of freedom of expression who feels outrage against extremists and solidarity with French journalists, yet still decide that you can cover the story clearly and thoroughly without publishing material that could offend Muslims or even incite hatred toward them.

You can also be committed to respect for all religions and believe in social justice, yet still decide that this attack on democratic values and freedoms was so outrageous that taking a stand by publishing the cartoons is the right thing to do.

Sorry, Ms. McGuire, but you’re a news outlet, and the cartoons are news. Readers want—deserve—to see exactly what aroused the ire of Muslims enough to make them commit murder. It is your obligation to show those cartoons. And they are satirical, not pornographic—exactly the kind of stuff that political cartoonists produce. But of course those satirists are making fun of politics, not religion, and politicians don’t kill them in retribution. And really, “respect for all religions”? Even the ones that incite hatred and murder? Do you really respect extremist Islam?

Your additional “explanation” is not convincing:

Recognizing that both choices are okay does not make one a nihilist; it makes one a realist.

No, it makes one a craven coward. It shows you to be someone afraid of Muslim ire. By capitulating to terrorists’ wrath in a way they wouldn’t do for any other faith, the CBC has helped those terrorists attain their goal. McGuire has, by refusing to publish the cartoons, given the Muslim extremists exactly what they want.

McGuire isn’t afraid of offending Muslims; she’s afraid that the terrorists will go after the CBC.

h/t: Jim E.