Self-aggrandizement: Paperback of FvF comes out, and two upcoming talks

May 16, 2016 • 10:15 am

Tomorrow, May 17, is the release date of the paperback of Faith Versus Fact—one year after the hardback. If you couldn’t afford the hardback, now’s your chance to get the book more cheaply. Buy it at any of the sites on the right sidebar, or as Hitchens used to say, at fine bookstores everywhere.

And, I have two talks coming up, one soon and one in October.

The American Humanist Association is having its annual meeting in Chicago, and it’s their 75th anniversary. I’ll be speaking on Sunday, May 29, at 10:45 a.m. on the nexus of humanism, atheism, and science. A book sale and signing will follow, and if you meow I’ll draw a cat in your book (if you can’t meow, you can hiss). All the details are here. Other speakers include Jared Diamond (2016 Humanist of the Year), Elizabeth Loftus, Medea Benjamin, Nebraska Senator Ernie Chambers, artist John DeLancie, Victoria Gettman, and John Shelby Spong.  You can register here. Sadly, I don’t even get to leave town for this one.

Just a reminder that I’ll also be speaking at the Freedom From Religion Foundation‘s Annual Meeting, this year from October 7-9 in Pittsburgh, Pennsylvania.  Other speakers will include Dan Dennett, Dan Barker, Lawrence Krauss, Susan Jacoby, Laurie Lebo, and Marie Shaub. I always enjoy these meetings because they have gravitas, but also fun. And the FFRF is our Official Website Secular Organization.™ Registration is only $60 for members, and you can sign up here. I believe they’re selling books, but if you already have one, bring it along, though you’ll have to meow or hiss for a cat drawing.

Do ravens have a theory of mind? A new experiment suggests “yes”

May 16, 2016 • 9:00 am

A new paper in Nature Communications by Tomas Bugnhyar, Stepehen Reber, and Cameron Buckner (free download; reference below) examines the question of whether ravens, already known to be really smart, have a “theory of mind.”

What do we mean by that? Well, according to the authors, a “theory of mind’ means that animals can have a representation of an action performed by other animals, and then act on that representation rather than having to see the action itself. In other words, the animal imagines that another individual of its species is around, and then, without using visual cues, acts according to what it thinks the other animal is thinking and will do.

To be specific, in this case the researchers studied the behavior of ravens in caching food, and how that ability changed if the ravens thought another individual was around but couldn’t see it.

It’s been known for a while that when corvids, like ravens and scrub-jays, are caching food—burying it underground to hide it—their behavior changes if they know another individual is around. They may then re-cache it, burying it in another place so their food isn’t purloined. Other ways they protect their caches are hiding them behind obstacles, interrupting their caching when they see another bird, and staying away from already-cached food so as not to attract the competitor’s attention to the location.

In such cases, the birds (mostly scrub-jays in these studies) clearly are reacting to the stimulus of seeing another bird, and, through either learning or evolution, behaving in a way to hide their food, which is clearly an adaptive act.

According to the authors, previous experiments like this don’t really address whether the birds have a “theory of mind”, that is, an imaginative representation of what the other bird might be thinking, because they can actually see the other bird. As the authors say, these experiments suffer from the problem of being “unable to empirically distinguish representations of directly observable cues from a genuine representation of ‘seeing’.”

In this experiment, the authors tried to get around this problem by watching ravens cache when they didn’t see any competitor ravens, but thought they were around because raven noises were played. There was thus no chance that the ravens were acting on “gaze cues” sent by another bird. The authors did this by making peepholes between rooms represent the assumed presence of competitor ravens.

Birds were allowed to cache bits of cheese and dog food in one of two adjoining rooms. The rooms were connected by a window that could be closed, as well as a peephole that could be blocked. The ravens were also trained to know what the peepholes were for, as they learned to look through them and see a human caching food in the next room, and then were allowed to go into that room to recover the food. They thus learned that the holes were a way to see into the adjacent room, even though they couldn’t see through them unless their eyes were right up against those peepholes.

The initial predictions of the experimenter were, if ravens had a representation in their minds of what another raven in the next room would be thinking or would do, that:

  1. Ravens would cache their food more rapidly if the peephole were visible (and they could hear raven noises) than if the peephole were not visible. (Peepholes were obscured with a board.) That would mean that they carried the idea that another raven might be looking through the peephole at them, watching them cache. In such cases they’d finish up caching as soon as possible. They could not see a raven through the peephole, as there were none in the next room, but they could hear raven noises. Their caching behavior is expected to resemble the behaviors performed when the windows were open and they could see and hear a raven in the next room.
  2. In the same way, a visible peephole was predicted to make the ravens less likely to “improve” their cache: go back and recache or change the layout. That behavior calls attention to possible competitors (as noted above), and so a reduction in “improvement” means that the birds thought another raven could see them through the peephole.

This protocol, then, involves three experiments, as shown below: bird caching while seeing another raven observing it (a); bird caching with another bird in the next room that it couldn’t see, but could hear (b); and peephole with no bird in the next room (c). Raven noises were played to the caching bird in all three conditions. All ravens were hand-reared and, while trained in cognition studies, had no experience with caching, either with or without other ravens nearby.

ncomms10506-f1
(From paper): Figure 1 | Sketch of experimental setup. (a) Observed (Obs) condition: The cover of the window is open (white bar) and the focal subject (storer, st) caches food in the visual presence of a conspecific (observer). (b) Non-observed (Non) condition: The cover of the window is closed (grey bar) and the focal subject caches food in visual isolation of a conspecific (non-observer). Both observers and non-observers make sounds in the experimental chamber, which are audible to the storer. (c) Peephole (Peep) condition: The cover of the window is closed (grey bar) but one of the two peepholes (small white square) is open; the focal subject caches food in the absence of any behavioural cues, whereas the presence of conspecifics is simulated via playback of sounds recorded from non-observed trials (symbolized by loudspeaker).

To ensure that ravens weren’t operating because they’d seen another raven watch them before (even before they reacted to the peephole), trials b and c were given first. Birds were then exposed to a (open window) and then b and repeated.

The results are given in the graphs below, and confirm both of the authors’ predictions:

  • Ravens subject to the peepholes and windows (“peep” and “obs” respectively) cached for significantly shorter times than ravens who could not see the bird in the next room, even though raven noses were played. That’s shown in (a) below.  Conditions connected with a line show that those comparisons were either significant (*) or not significant (NS). The duration of caching was, on average, about 14 seconds when they couldn’t see the neighbor raven watching, but were significantly reduced to 7-8 second when either the peephole was visible or the window was open. There was no difference between the peephole and open-window conditions, suggesting that ravens construed the peephole as if it denoted “another raven is watching”.
  • As predicted, ravens “improved” their caches less often when the peephole was visible, or when the window showed another raven next door, than when the window was closed. Plot (b) shows this difference. Again, there is no difference between “open window” and “peephole” conditions.

Note that raven noises were played in all conditions, so the differences seen can’t simply be ascribed to hearing a competitor. No, there must be something about ravens thinking they’re being watched that explains the peephole results.

ncomms10506-f2
(From paper). Figure 2 | Effects of condition on caching behaviour. (a) Mean time to finish a cache and (b) mean number of revisits with improvements, in the non-observed condition (Non, total of 4 trials per 10 ravens), observed condition (Obs, total of 4 trials per 10 ravens) and peephole condition (Peep, total of 2 trials per 9 ravens). Box plots represent 25th and 75th percentiles, centre line indicates the median, whiskers represent non-outlier range and dots are outliers (Friedman test, post hoc Wilcoxon signed ranks test; *P < 0.05; NS = non-significant).

Does this show that ravens really do have a “theory of mind”? Well, it shows that ravens can act on the basis of assumed behaviors without having to see other animals. They think they’re being watched because they associate the peephole with vision, and so are acting on assumptions rather than observed behaviors. If that is a theory of mind, then ravens have one. Draw your own conclusions.

Let me add one more thing: the ravens altered their caching behaviors without ever having to suffer the loss of their cache to a competitor. Indeed, they altered their behaviors without ever having seen a competitor raven in the next room. To me this suggests that the caching behavior, and the way it changed under the assumption of a nearby competitor, are evolved rather than learned traits. These were naive ravens, and had no experience in nature before the experiment.

UPDATE:  A reader suggested that maybe evolution of this type isn’t involved, and that the ravens may be generalizing from their own behavior. That is, perhaps their behavior stemmed from watching through the peephole and seeing the humans cache food, and then going into that room and retrieving the food. They could then assume that if another raven is around, it would do what they did—retrieve food. That is still a theory of mind, but doesn’t necessarily involve evolved propensities to behave differently when you think a conspecific is around.

But how to determine if re-caching is evolved? I think one can expose naive ravens to another raven without any training. Having it cache food (presumably that is evolved), and see if it recaches if another raven is visible compared to the window open with no raven visible. It could be using behavioral cues, but those cues would have to act on an evolutionary program if they caused naive ravens to change their caching behavior.

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Smarter than you think.

____________

Bugnyar, T., S. A. Reber, and C. Buckner. 2016. Ravens attribute visual access to unseen competitors. Nat Commun 7. Article number:10506doi:10.1038/ncomms10506

Readers’ wildlife photos

May 16, 2016 • 7:30 am
Today’s photos come from reader Damon Williford:
Attached are some recent wildlife photos from southern Texas. The first 2 photos are of a dragonfly, the Seaside Dragonlet (Erythrodiplax berenice). [JAC: I assume these are different sexes, as the male is described as dark and the female much more yellow:
2 2016-04-23 Seaside Dragonlet (male)-3298
1 2016-04-23 Seaside Dragonlet (female)-3310
The next 5 photos are some of the birds currently migrating through southern Texas, including 1) Rose-breasted Grosbeak (Pheucticus ludovicianus), 2) Northern Waterthrush (Parkesia noveboracensis), 3) Blackburnian Warbler (Setophaga fusca), 4) Orchard Oriole (Icterus spurius), and 5) Stilt Sandpiper (Calidris himantopus). The flowers that the Orchard Oriole is sipping nectar from is coral bean (Erythrina herbacea).
Rose-breasted Grosbeak:
3 2016-04-23 Rose-breasted Grosbeak (Blucher Park)-2878
Northern waterthrush:
4 2016-04-23 Northern Waterthrush (Port A Paradise Pond)-3072
Blackburnian warbler:
Orchard oriole on coral bean flowers;
6 2016-04-23 Orchard Oriole (Packery Channel0-3313
Stilt sandpiper:
7 2016-04-23 Stilt Sandpiper (Charlie's Pasture)-3151
These photos are of a late-wintering Ruddy Duck (Oxyura jamaicensis) and a Long-billed Curlew (Numenius americanus). Despite many years of living in this area and seeing Long-billed Curlews every winter, I still find it weird to see a large shorebird walking and foraging across a soccer field, golf course, or a suburban lawn.
 Ruddy duck:
8 2016-04-23 Ruddy Duck (Port Aransas Bird Center)-2968
Long-billed curlew:
9 2016-04-17 Long-billed Curlew (Dick Kleberg Park)-2788
A Texas Tortoise (Gopherus berlandieri).
10 2016-04-17 Texas Tortoise (Kaufer-Hubert Memorial Park)-2808

Monday: Hili dialogue

May 16, 2016 • 6:15 am

Now it really is Monday, or at least I’m pretty sure. And NO RAIN: mostly sunny with a high of about 66°F (19°C). On May 16, 1943, the uprising of the Warsaw Ghetto came to an end as the Nazis dynamited the Great Synagogue and then the buildings. 13,000 Jews were killed and the remaining 50,000 sent to the camps. Onl 300 Nazis died. Only two buildings remain in Warsaw; the outline of the former ghetto is inlaid in the street in bricks. On this day in 1975, Junko Tabei, a 35-year-old Japanese, became the first woman to reach the summit of Mount Everest.

Notable births on this day include the Russian Élie Metchnikoff (1845), who won the Nobel Prize, along with Paul Ehrlich, for their work in immunology. Those who died on this day include the great jazz guitarist Django Reinhardt (1953), Sammy Davis Jr. (1990), and puppeteer Jim Henson (1990; same day as Sammy).

Meanwhile in Dobrzyn, Hili is tattling on Cyrus:

A; What are you looking at?
Hili: Cyrus’s run off somewhere again without permission.
P1040262

In Polish:

Ja: Czemu się tak przyglądasz?
Hili: Bo Cyrus znowu gdzieś pobiegł bez pozwolenia.

And a nice tw**t from Persian Rose:

https://twitter.com/PersianRose1/status/731776250130235393

 

More Lagniappe: Fox kit harasses black cat (h/t: jsp). Click on screenshot to see short video:

Screen shot 2016-05-16 at 4.50.14 AM

Was Carl Sagan an accommodationist?

May 15, 2016 • 2:31 pm

The PuffHo Religion and Science page is a real hoot—if you can stand its endless and annoying attempts to reconcile the two areas. It’s relentlessly accommodationist and invariably silly. Although the posts aren’t frequent, I saw a newer one today, which is both funny and sleazy, as it misrepresents Sagan’s views on religion.

The piece is “Listen to Carl Sagan open up about religion and the possibility of alien life,” by Carolyn Gregoire, a senior PuffHo writer. It points you to the Blank on Blank site (a production of the Public Broadcasting Service) and then to 6.5-minute audio, given below) of Sagan being interviewed by the late Studs Terkel. Here’s how PuffHo characterizes the video:

Sagan also touches on the age-old conflict between science and religion, rejecting a literal interpretation of the Bible as scientifically wrong, but noting that the two ways of thinking are ultimately about finding answers to life’s biggest questions — answers that may ultimately be less important than the questions themselves.

Well, that’s not exactly true. The fun begins at 3:29, when, after discussing the possibility of extraterrestrial life, Sagan notes that both religion and science are “after the same thing” (understanding the cosmos and our origins), but that religions all contradict each other about the facts. How, then, can you know which religion makes correct claims? There’s no way, says Sagan—unless science can adjudicate their claims.  This, in fact, is one of the points of Faith Versus Fact. 

After a brief ad, Sagan talks about Einstein’s “religion,” maintaining, as I think is the case, that the physicist saw God as “little more than the sum total of the laws of the universe.”

If you can find anything in this video substantiating Gregoire’s implication that the questions are more important than the answers, let me know. (I see that trope all the time, and still don’t know what it means. I think it’s a Deepity). And of course the summary doesn’t note at all that Sagan claims a priority of science over faith in finding those answers. Nope, PuffHo isn’t allowed to say stuff like that!

To see how little Sagan really thought of religion, read The Varieties of Scientific Experience (edited by Ann Druyan), which I consider one of Sagan’s best books—and one that’s sadly neglected. There he makes no bones about the uselessness of faith.

 

Jaguar catches a crocodile

May 15, 2016 • 2:30 pm

Reader Merilee called my attention to this video on Facebook, showing what appears to be a jaguar catching a crocodile. The cat simply leaps into the water and snags the beast, dragging it away for lunch. What an amazing feat, and what a brave cat!

Click on the screenshot to see the 44-second clip:

Screen Shot 2016-05-15 at 11.49.25 AM

I wonder if it tasted like chicken.

Is the appendix a vestigial organ?

May 15, 2016 • 1:00 pm

One of the main mistakes creationists make is arguing that if a vestigial trait is actually used for something, then it is neither vestigial nor gives us evidence for evolution. (Such features testify to common ancestry.)  Both creationist claims are wrong. They rest on the false argument that if the appendix, for instance, actually has some useful function, then it can no longer be claimed as evidence for evolution—as a now-useless remnant of a much larger part of the intestine that was useful in our ancestors.

Why is that argument false? Because if a feature is an evolutionary modification of an obviously ancestral feature, like the flippers of penguins (which clearly evolved from wings), then it can be both useful and vestigial, and therefore testimony of evolution. It’s important that readers remember this, because creationists conveniently forget it.

One feature that can be both vestigial and useful is the human appendix. Once thought to be not only useless, but positively detrimental (our ancestors died from its inflammation), we’re now finding that it has some use, as it contains immune-system cells that may serve as a refuge for useful bacteria, bacteria that can repopulate our gut if it’s wiped clean by diseases like cholera. A February article on the science site Cosmos—unfortunately called “The Appendix—Darwin’s Mistake“—points out increasing evidence that the appendix has a function.

Author and physician Norman Swan writes this in Cosmos:

. . . over the last few years the thinking has changed. The appendix turns out not to be an evolutionary curiosity but a handy little organ with the potential to resuscitate the bowel. Back in 2007, researchers at Duke University in North Carolina proposed that the appendix was actually a “safe house” for normal gut bacteria that could be put to use when the bowel had been devastated by, say, an infection such as cholera and needed to be repopulated by healthy bacteria.

The Duke group had found colonies of protective microbes known as biofilms were disproportionately produced by the appendix. Ironically, the immune cells found in the gooey mucous lining of the appendix and bowel actually help these biofilms to form.

If this theory were true then people without an appendix might be more vulnerable to dangerous gut infections. A study a few years later found evidence for this. People who’d had their appendix removed were significantly more likely to suffer recurrently from the serious and potentially life-threatening recurrent Clostridium difficile infection.

. . . the lining of the appendix contains a newly discovered class of immune cells known as innate lymphoid cells. Other lymphoid cells must be specifically tuned to attack the latest strains of bacteria or viruses, but these cells come ready wired to respond to the wide range of biological insults that flow down the intestines from our daily diet.

Experimenting in mice, the researchers found that these innate lymphoid cells were critical to maintaining the tissue around the caecum. If the cells were removed, the caecum shrank, suggesting they played a vital role for the integrity of the tissue. They also found that mice without these innate lymphoid cells were more vulnerable to a pathological
gut infection. This supports the study I mentioned earlier where patients without their appendix were more likely to suffer from recurrent C. difficile infections.

Darwin mentioned in The Descent of Man that the appendix is “useless” and “a rudiment”, as well as being variable, so that humans have really different sizes of their appendixes, and some have none at all.

Was he wrong about the appendix being evidence for evolution? No. Yes, he was wrong about its being “useless”, but not about its variability or its status as a rudiment of the larger appendixes in our herbivorous relatives.

Granted, the data above might be true, but that doesn’t detract from the appendix’s use as evidence for evolution. Yet creationists love finding that rudimentary organs may still be useful for something, as they think (not very clearly, as usual) that if something has a use, it can’t possibly be vestigial.

In fact one  creationist website takes this quote from Why Evolution is True to show that the evidence for evolution is weak:

We humans have many vestigial features proving that we evolved. The most popular is the appendix… our appendix is simply the remnant of an organ that was critically important to our leaf-eating ancestors, but is of no real value to us.

But the whole section, appearing on pages 60 and 61, notes that the appendix may have a function:

We humans have many vestigial features showing that we evolved. The most famous is the appendix.  Let’s look at it closely. Known medically as the vermiform (“worm shaped”) appendix, it’s a thin, pencil-sized cylinder of tissue that forms the end of the pouch, or caecum, that sits at the junction of our large and small intestines.  Like many vestigial features, its size and degree of development are highly variable: in humans, its length varies from about an inch to over a foot. A few people are even born without one.

In herbivorous animals like koalas, rabbits, and kangaroos, the caecum and its appendix tip are much larger than ours. This is also true of leaf-eating primates like lemurs, lorises, and spider monkeys. The enlarged pouch serves as a fermenting vessel (like the “extra stomachs” of cows), containing bacteria that help the animal break down cellulose into usable sugars. In primates whose diet includes fewer leaves, like orangutans and macaques, the caecum and appendix are reduced.  In humans, who don’t eat leaves and can’t digest cellulose, the appendix is nearly gone. Obviously the less herbivorous the animal, the smaller the caecum and appendix.  In other words, our appendix is simply the remnant of an organ that was critically important to our leaf-eating ancestors, but of no real value to us.

Does an appendix do us any good at all?  If so, it’s certainly not obvious.  Removing it doesn’t produce any bad side effects or increase mortality (in fact, removal seems to reduce the incidence of colitis).  Discussing the appendix in his famous textbook  The Vertebrate Body,  the paleontologist Alfred Romer remarked dryly, “Its major importance would appear to be financial support of the surgical profession.”  But to be fair, it may be of some small use.  The appendix contains patches of tissue that may function as part of the immune system.  It has also been suggested that it provides a refuge for useful gut bacteria when an infection removes them from the rest of our digestive system.

But these minor benefits are surely outweighed by the severe problems that come with the human appendix.  Its narrowness makes it easily clogged, which can lead to its infection and inflammation, otherwise known as appendicitis.  If not treated, a ruptured appendix can kill you. You have about one chance in 15 of getting appendicitis in your lifetime. Fortunately, thanks to the evolutionarily recent practice of surgery, the chance of dying when you get appendicitis is only 1%.  But before doctors began to remove inflamed appendixes in the late 18th century, mortality probably exceeded 20%. In other words, before the days of surgical removal, more than one person in a hundred died of appendicitis. That’s pretty strong natural selection.

So yes, the appendix may have a function, but it’s still a vestigial organ, and evidence for evolution. The only remaining question is this: is it a detrimental  feature? Well, because of doctors it isn’t now, but it may well have been over the bulk of human evolution, as I note above. And that may be the reason it’s not only small but variable among people. Features that are crucial for our survival and reproduction don’t vary nearly that much. Perhaps its marginal use as a refuge for bacteria wasn’t useful enough to overcome the disadvantage of its being prone to infection.

Saying that there is a “function” to the appendix isn’t enough. To show that its presence is (or was) adaptive compared to its non-presence, you have to show that the benefits of having a bacterial refuge (in terms of future reproduction) outweighed the problems of having an infection-prone organ.  And nobody has showed that. So, it’s still possible that the appendix, while vestigial and rudimentary (and highly variable: the sign of a feature, like wisdom teeth, that’s disappearing over time), may have been detrimental in our ancestors and is detrimental now.

Nevertheless, creationists continue to harp on a functionality of the appendix as disproving evolution. If there is a lesson from this post, just remember: THAT IS NOT TRUE.

But let us for the moment grant the creationists their argument: that the appendix is not a remnant of a useful feature, but a feature that evolved, or is maintained, by a net reproductive benefit to its carrier. Does that disprove evolution? Hardly, given the massive evidence for evolution from a gazillion other areas.

And there are features that don’t seem, even under scrutiny, to have any positive effect on your reproduction. If you want a feature that is almost certainly does not enhance fitness, try our vestigial ear muscles (also variable among people), or, better yet, the hundreds of “dead genes” that we harbor in our genome: genes that had a function in our ancestors but have been silenced. (Olfactory-receptor genes and yolk-protein genes in humans are two examples.) Let the creationists explain why the creator put nonfunctional “dead” genes in our DNA, and just those genes that are active and adaptive in our ancestors.

And seriously, Dr. Swan: “Darwin’s mistake?” What are you implying by that? As I said, it may well be true that, over the bulk of human evolution, having an appendix was, on net, detrimental. “Detrimental” is “worse than useless,” so Darwin might not have been so wrong after all.

h/t: Barry