Caturday Felids – wild tiger cubs in Sumatra

January 16, 2010 • 10:32 am

by Matthew Cobb

According to The Guardian:

The video, shot in October on the island of Sumatra, shows two, one-year-old cubs and their mother approaching and sniffing the camera before moving on.

WWF’s tiger research team set up four video camera traps along known tiger routes that allow the animals to move between two protected areas in central Sumatra – the Rimbang Baling wildlife reserve and Bukit Tigapuluh national park.

Ian Kosasih, WWF Indonesia‘s forest programme director, said the images showed the need to turn the corridor into a protected area and for paper and palm oil companies in the area to shield what he called high-value forest.

“When these cubs are old enough to leave their mother … they will have to find their own territory,” Kosasih said. “Where will they go? As tiger habitats shrink with so much of the surrounding area having been cleared, the tigers will have a very hard time avoiding encounters with people. That will then be very dangerous for everyone involved.”

Sumatran tigers are on the brink of extinction because of rapid deforestation, poaching and clashes with humans. Their numbers have dwindled to about 400 from about 1,000 in the 1970s, the WWF estimates.

The infrared-triggered camera traps, which are activated upon sensing body heat in their path, have become an important tool to monitor the population and identify which areas of forest are used by tigers, WWF said. WWF operates dozens of cameras throughout the central Sumatran province of Riau.

Karmila Parakkasi, the leader of WWF Indonesia’s Sumatran tiger research team, said her crew first captured still images of the tigress and a cub in July 2009 using still camera traps. The photos, however, were not clear. Video camera traps were then installed in September at the same location.

More on coincidence – or, did space aliens build Woolworths?

January 16, 2010 • 4:50 am

by Matthew Cobb

Over at The Guardian, Ben Goldacre’s excellent “Bad Science” column deals with the issue of “coincidence”. If such rigour were applied to religion…

Every now and then you have to salute a genius. Both the Daily Mail and the Metro report research analysing the positions of Britain’s ancient sites, and the results are startling: primitive man had his own form of satnav.

Researcher Tom Brooks analysed 1,500 prehistoric monuments, and found them all to be on a grid of isosceles triangles, each pointing to the next site, allowing our ancestors to travel between settlements with pinpoint accuracy. The papers even carried an example of his map work, which I have reproduced here.

That this pattern could occur simply because one site was on the way to the next was not considered.

Brooks has proved, he explains, that there were keen mathematicians here 5,000 years ago, millennia before the Greeks invented geometry: “Such is the mathematical precision, it is inconceivable that this work could have been carried out by the primitive indigenous culture we have always associated with such structures … all this suggests a culture existing in these islands in the past quite outside our expectation and experience today.” He does not rule out extra terrestrial help.

In the Metro Tom Brooks is a researcher. To the Daily Mail he is a researcher, a historian, and a writer. I hope it’s not rude or unfair for me to add “retired marketing executive of Honiton, Devon”.

Matt Parker, his nemesis, is based in the School of Mathematical Sciences at Queen Mary, University of London. He has applied the same techniques used by Brooks to another mysterious and lost civilisation.

“We know so little about the ancient Woolworths stores,” he explains, “but we do still know their locations. I thought that if we analysed the sites we could learn more about what life was like in 2008 and how these people went about buying cheap kitchen accessories and discount CDs.”

The results revealed an exact and precise geometric placement of the Woolworths locations.

“Three stores around Birmingham formed an exact equilateral triangle (Wolverhampton, Lichfield and Birmingham stores) and if the base of the triangle is extended, it forms a 173.8 mile line linking the Conwy and Luton stores. Despite the 173.8 mile distance involved, the Conwy Woolworths store is only 40 feet off the exact line and the Luton site is within 30 feet. All four stores align with an accuracy of 0.05%.”

Parker used an ancient technique: he found his patterns in 800 ex-Woolworths locations by “skipping over the vast majority, and only choosing the few that happen to line up”.

With 1,500 locations, Brooks had almost twice as much data to work with, and on this issue Parker is clear: “It is extremely important to look at how much data people are using to support an argument. For example, the case for global warming covers vast amounts of comprehensive evidence, but it is still possible for people to search through the data and find a few isolated examples that appear to show otherwise.”

An iguana appetizer

January 16, 2010 • 1:07 am

by Greg Mayer

No, it’s not a reptilian hors d’oeuvre. It’s pictures of a Galapagos land iguana, Conolophus subcristatus, to whet your appetites for those Jerry will have when he gets back. I toured the Galapagos 20 years ago, and took loads of pictures, but they’re Kodachromes (which I haven’t scanned), so the pictures of our saurian friend below are from my colleague and fellow evolutionary biologist Joe Balsano, who visisted in 2007, and then kindly regaled my Darwin class with tales and pictures of his adventure. (More Galapagos reptile photos, at the Galapagos Conservancy, here.)

The Galapagos land iguana, Conolophus subcristatus (Joe Balsano).

The first link above for the Galapagos land iguana, from the Galapagos Conservation Trust (the UK companion to the US-based Galapagos Conservancy) is slightly out of date when it says there are two species of Galapagos land iguana: there are three. The common, or just Galapagos, land iguana, Conolophus subcristatus, is shown above. The Barrington land iguana, C. pallidus, occurs only on the island of Santa Fe (also known as Barrington). The two species differ fairly subtly in color and scalation (pallidus being less colorful, with a more distinctive crest of spines; see the original description by Edmund Heller here [go to Proceedings of the Washington Academy of Sciences in the left sidebar], and the classic paper by van Denburgh and Slevin on Galapagos iguanid lizards from the California Academy Expedition here [go to Proceedings-California Academy of Sciences 4th series in the left sidebar]). These subtle differences are the sort of differences between allopatric populations (i.e., populations inhabiting distinct, nonoverlapping, geographic areas) that can lead to long and inconclusive arguments as to whether the populations should be recognized as species, or subspecies, or not named at all. These arguments are a common, and not at all unexpected, issue when dealing with organisms living on islands. (The evolutionary process issues involved, although not the taxonomic issues, are dealt with comprehensively in Jerry’s and Allen Orr’s Speciation.) But the newly discovered species the pink land iguana of Volcan Wolf on Isla Isabela (Albemarle), Conolophus marthae, is not one of these wishy-washy, is-it or is-it-not-a-species, cases: it’s a new species, alright.

The pink land iguana, Conolophus marthae. From Gentile, G., et al. 2009. An overlooked pink species of land iguana in the Galápagos. Proceedings of the National Academy of Sciences 106:507-511.

It is amply distinct, both morphologically and genetically, from the other two species, including in coloration and form of the nuchal crest, as you can see from the pictures above. But, more importantly, it is also sympatric (i.e., living together in the same place) with the common land iguana. This is important because the truest test of species status is the test of sympatry: whether two forms interbreed when they co-occur in nature. In this case, the two species live together side by side, and reproductive isolating barriers, such as differences in male behavior (see the original species description by Gabriele Gentile and Howard Snell), keep them genetically isolated from one another. (Gentile and colleagues did find a single individual which showed evidence of some genetic mixing, but it is evidently insufficient to breakdown the genetic isolation of the forms.) This is a really remarkable and exciting discovery, given how many scientists, park rangers, and even just tourists, have traversed these islands. (I have been to Isabela, not far, at least as the crow flies, from where the new species was discovered.)

Although I think it’s fair to say that interested scientists have been delighted by the discovery of the pink land iguana, a number have been disturbed by what Gentile and Snell did, or rather didn’t do, in naming the species: they did not collect a specimen to document the species, but relied upon blood samples and photos. Usually, when a new species of animal is described, a particular specimen is designated the holotype, and preserved and deposited in the collection of a museum that will make the specimen available for study by other scientists. The specific identity of the holotype fixes the application of the name, and study of the holotype helps resolve any questions or confusions concerning the status or identity of the species, as well as contributing to further knowledge of the species’ biology. But if there is no holotypic specimen, then other scientists are unable to check the describer’s claims, or test their conclusions, or advance the study of the species in any way. Gentile and Snell were aware that what they were doing was problematic, and addressed the question in their paper. They even designated a particular iguana as the holotype, but left it in the wild, hoping that at some later time it might be retrieved using a radio tag they put in it. They did not collect it out of concern that loss of even a single individual might drive the species extinct.

Alain Dubois of the Museum nationale d’Histoire naturelle and Andre Nemesio of the Universidade Federal de Minas Gerais, Brazil, have led the criticism of Gentile and Snell, while acknowledging that there may be times when it is not wise to collect a specimen. See papers by them here, here, and here; Thomas Donegan of Fundacion Proaves supports what Gentile and Snell did. In the bad old days of systematic zoology, species were often named without holotypes, and this led to much confusion. Lately, there have been several species named for which holotypes have not been collected, for the same reasons advanced by Gentile and Snell, and this has led to much controversy; many of the key papers are cited in the woks of Dubois, Nemesio, and Donegan, or in works cited therein.

Some people might ask, what’s wrong with a photo? Well, I think it should be evident that there are many things you can’t determine from a photo, but perhaps a mention of the most famous species named on the basis of a photograph will make some of the problems clear: that species is the Loch Ness monster, Nessiteras rhombopteryx (abstract only without subscription). To put it only a bit too simply, specimens are what separate zoology from cryptozoology, science from pseudoscience. More on this in a later post.

How many pterosaurs do you need to draw a straight line?

January 15, 2010 • 12:45 pm

by Matthew Cobb

I promise I’m not making any of this up, but this afternoon, paleontology PhD student Holly Barden came to my office with a present from my colleague, dino-man Phil Manning. Phil was moving office and came across a great Lego construction toy that you could make into a Stegosaur (for reasons that I won’t go into, I have a huge collection of toy Stegosaurs). So far, so ordinary. Except… the Lego kit could also make A PTEROSAUR. And furthermore, LOOK AT THE NAME OF THE KIT. SIGNATURE ON THE LID!

Furthermore, this afternoon my kids were watching defunct UK prehistoric drama Primeval, in which PTEROSAURS came through the anomaly into modern day Britain. I rest my case. FOUR TIMES in TWO DAYS the divine pterosaur (yet again a Pteranodon – no coincidence I think) has spoken to me.

The fact that the Lego box could equally be a message from a Stegosaur god is neither here nor there:

In fact, my daughter Evie (11) and I are making the Stego kit right now – not an easy task! But just like real Stegosaurs, it does have eyes that flash red when you press a button at the back of its head, and great big carnivorous teeth. Eh? Oh.

New evidence for the divine: a plastic pterosaur

January 15, 2010 • 5:16 am

by Matthew Cobb

Animals are very good coincidence detectors. It’s how we learn. Bell rings, food comes, dog salivates. Light comes on, floor is shocked, rat avoids light. Humans are particularly good at it, so much that we end up feeling spooked when banal coincidences happen. “I just thought of you, then you phoned/mailed/turned the corner”. (Of course, we’re never struck by all those times that we thought of someone and they didn’t immediately hove into view). This capacity is at the root of all religions.

So I now declare that I have had a deeply moving experience because, no sooner had I blogged about pterosaurs yesterday, than this completely unlifelike pterosaur glider arrived, stuck to the cover of my youngest daughter’s copy of NG Kids (highly recommended). HOW SPOOKY IS THAT?

But what deity is responsisble? How can we praise him/her/it/them? What new Church should I set up? And how much should I charge?

To be honest, the question that is really preoccupying me is – how could they make a Pteranodon glider that looks more like a flying fish than a flying reptile?

Everything you wanted to know about pterosaurs

January 14, 2010 • 12:55 pm

by Matthew Cobb

A bunch of people who study pterosaurs (the flying reptiles that lived at the same time as the dinosaurs but were NOT dinosaurs) have just launched an excellent website, Pterosaur.net. As they explain:

“a collection of pterosaur researchers and artists directly working with us, realised that there was no comprehensive, high quality website dedicated to this popular group of prehistoric animals. This acts in stark contrast to a number of excellent dinosaur-based websites and, frankly, we couldn’t quite figure out why when pterosaurs are just as famous and popular as their dinosaur cousins. With this in mind, we set out to create a pterosaur based website that

  • Presents up-to-date information on pterosaurs in an accessible fashion
  • Sources information from the primary scientific literature
  • Is written by qualified, experienced pterosaur researchers
  • Can reflect the active research occuring in pterosaur science
  • Provides professionally produced pterosaur art and photographs of pterosaur specimens

The result is that all too rare thing on the web – a detailed, accurate account that you can have absolute confidence in. They also have an excellent section dealing with pterosaurs in popular culture, although sadly it doesn’t have a link to the hilarious Objective Ministries site, which, as Dr Richard Paley describes, is looking for funding in their project of finding living pterosaurs:

The goal of Project Pterosaur is to mount an expedition to locate and bring back to the United States living specimens of pterosaurs or their fertile eggs, which will be displayed in a Pterosaur Rookery that will be the center piece of the planned Fellowship Creation Science Museum and Research Institute (FCSMRI). Furthermore, the rookery facility will establish abreeding colony of pterosaurs in order to produce specimens that could then be put on display by other regional institutions or church groups.

(Before steam comes out of your ears – go visit the site!)

A website Jerry might like

January 14, 2010 • 10:14 am

by Greg Mayer

Following some links from PZ, I ran across this website: Skepticcat. It’s got cats and skepticism. Sample text:

If LOLcats ebolbed from tigers den y r there still tigers?

Sample image:

[The lolcat is a comment on Pat Robertson saying that the Haitian earthquake is Haiti’s just desserts for its sinful past (2 posts). Robertson’s abysmal ignorance is signalled by, among other things, his saying that Haitian independence was won from Napoleon III, who wasn’t born until 4 years after the successful end of the Haitian war of independence, while his moral decrepitude is signalled by his main claim.  On this matter, see also PZ, Andrew Sullivan, Ta-Nehisi Coates (2 posts), and Rachel Maddow (2 posts).]