A pink elephant!

March 21, 2009 • 2:54 pm

Pink elephants were once the symptom of drunkenness and delirium tremens.  But now one has been sighted: an albino elephant calf in Botswana.   This is apparently a case of albinism: a condition that is extremely rare in pachyderms.  Biologists worry that, as in humans, the condition could cause eye or skin problems.  Read the BBC report about this beastie here.

_45581600_pinkelephant1of3.

The New Scientist has no shame–again!

March 21, 2009 • 5:27 am

When  New Scientist published its “Darwin was WRONG” cover a few months ago, several of us wrote in to complain about the distortion of Darwin’s work. (The cover referred to how gene transfer might blur the branches of phylogenetic trees, something that Darwin had no inkling of.)  The editor, Roger Highfield, appeared to be chastened.  Since then, the cover has been waved about by creationists in the US to show that evolution really is on the skids.

Well, apparently Roger Highfield is not repentant: he has used that cover AGAIN in advertising his rag (see below).  The man has no shame; this is obviously a deliberate decision, and one he approved.  Letter writing doesn’t seem to have sufficed — perhaps it’s time to boycott  New Scientist (n.b., by “boycott,” I mean to refuse, as scientists, to write for them or have anything to do with them).

new-scientist

(Thanks to Richard Dawkins for forwarding this.)

Note that Graham Lawton, who writes for New Scientist, admitted in a post on Pharyngula that this was deliberate sensationalism:

. . . .

As for public understanding. Well, the cover is designed to sell the magazine. If we run very straight, sober covers, we sell fewer mags, we get fewer clicks and nobody blogs about us, so fewer people read what we produce. Now, I’d argue that this week’s cover has got us a lot of attention, and as a result lots of people will read my story. Many will learn something about evolution. Public understanding will increase. So which way do you want it?

Or look at it this way. Nature is a very educational read. Many people could learn a lot from it. It’s widely available and really quite entertaining and accessible. But very few members of the public read it. Why? They don’t sell themselves.

And yes, the ToL [Tree of Life] is still quite useful in places. I say as much in the article.


Caturday felids: two for one!

March 20, 2009 • 11:45 pm

We’ll start off today with a video of Ugly Bat Boy (aka “Uggs”), a cat resident in a veterinary hospital in New Hampshire.  He is obviously a genetic mutant, since there was another kitten in the litter having the same bizarre appearance. I think he’s cute! (Also see the article and video about Uggs here.)

For more comic relief, I present Captain Pugwash, the famous “Broccoli Kitten”!:

Do black-and-white cats have a predilection for broccoli? Here’s another.

Who is the type specimen of Homo sapiens?

March 20, 2009 • 12:43 pm

by Greg Mayer

The answer is: Carl Linnaeus, the great Swedish naturalist. But there’s a story behind this bare fact.

One of the great problems facing natural history in the 18th century was the problem of diversity: the great variety of plants and animals from all over the world that began flooding into European museums as the result of voyages of exploration. Although it was not until Darwin’s idea of descent with modification that a fully satisfactory solution to the problem began to come within reach, Linnaeus made a signal contribution by establishing a nomenclature– a system of names– by which this diversity could be ordered, and with which it was possible to discuss the problem.  The principles of the system have undergone considerable development since then, but the 10th edition of Linnaeus’ Systema Naturae remains the starting point of zoological nomenclature.

One of the post-Linnaean developments is that all species should have a type specimen. A type specimen is not, as the name might seem to imply, a typical (in the sense of normal or average) member of a species.  Rather it is a specimen that fixes the application of a name to a particular zoological species.  Thus, I know that the name Anolis roosevelti applies to the large, arboreal (and now, unfortunately, apparently extinct) anole lizard of the islands east of Puerto Rico, because I can go the Museum of Comparative Zoology and examine the type specimen that is kept and carefully preserved there, and see that this specimen is indeed a member of that species.  Having the application of a name fixed is most important when it turns out that more than one species is masquerading under one name.  My friend and colleague Richard Thomas of the University of Puerto Rico, for example, discovered that Eleutherodactylus portoricensis, one of the most beloved frogs of Puerto Rico, actually consisted of two species, one of which had previously gone unrecognized.  The type specimen of E. portoricensis belonged to one of these two species, so it, of course, retained the name portoricensis; the newly recognized one was actually the more common and widespread of the two, and he gave it the name  Eleutherodactylus coqui, after its vernacular name, coqui, which was given in imitation of its nocturnally ubiquitous call.

All of this is by way of introduction to the issue at hand: who is the type specimen of Homo sapiens? In last week’s issue of Nature, Andrew Hendry of the Redpath Museum says

curiously, humans have never had a designated type specimen, despite attempts by American palaeontologist Edward Drinker Cope to have himself so designated

Is this so? No. In 1959, W.T. Stearn, in an article (Systematic Zoology 8:4-22) commemorating the 200th anniversary of the 10th edition of the Systema Naturae, wrote

Since for nomenclatorial purposes the specimen most carefully studied and recorded by the author is to be accepted as the type [specimen], clearly Linnaeus himself, who was much addicted to autobiography, must stand as the type of his Homo sapiens!

While there is a certain tongue-in-cheek quality to this, it satisfies the criteria of the Code of Zoological nomenclature, and thus Stearn has designated Linnaeus as the type specimen of Homo sapiens (Linnaeus, in naming Homo sapiens, had not designated a type specimen, which in his day was not customarily done).

So, as noted at the start, we do have a type specimen, Carl himself.  Did the great paleontologist Edward Drinker Cope ever try to have himself made the type specimen of Homo sapiens? Again, no.  Although Cope did leave his body for study, and there may be an oral tradition at the Academy of Natural Sciences that he wanted to be the type, there’s no written evidence he did. Earle Spamer, now of the American Philosophical Society, wrote a detailed article (Proceedings of the Academy of Natural Sciences of Philadelphia 149:109-114) exploring this claim. The written claim arises in a popular book by Louie Psihoyos and John Knoebber called Hunting Dinosaurs, with a foreword by famed paleontologist Bob Bakker. In the book, the authors relate how in about 1993 they borrowed Cope’s skull, and traveled around with it, showing it to paleontologists.  Bakker, according to the story, told them that man had no type specimen, and since Cope wanted to be it, they set about making it so.  But even if Bakker was unaware of Stearn’s designation decades earlier, the details of the story are all wrong.  Bakker would have known that a type designation does not require the description and measurements pictured and described in the book, that the type specimen must be chosen from among specimens examined by the original author (in this case Linnaeus in 1758, 82 years before Cope’s birth), and that there is no official “review board” to which such designations are submitted (the International Commission on Zoological Nomenclature can be appealed to in order to set aside the rules, but they don’t review actions that follow the rules).  In the foreword, Bakker himself makes no mention of ever having tried to actually make Cope the type specimen. No publication by Bakker claiming to make Cope the type has ever appeared, and Psihoyos and Knoebber’s journalistic account of Bakker’s supposed but unfulfilled intention to do so does not itself constitute a published nomenclatural act under the Code of Zoological Nomenclature.

It’s hard to tell how much Bakker might have been pulling Psihoyos’ and Knoebber’s legs, or just playing along, or if the authors just misinterpreted a lot of what Bakker said and did. Spamer seems to take this all a bit too seriously, and may err in ascribing much of it to Bakker, who did not actually author any part of the book but the foreword. But Carl Linnaeus is the type specimen of Homo sapiens; and Edward Drinker Cope has never been put forward for the job, and, without special action by the International Commission, he wouldn’t even qualify for it.

(Note by JAC:    Thanks to Dr. David Hillis of the University of Texas at Austin, who helped clarify this situation.)

Update: I’ve just come across a newspaper article that says that Bakker did publish a designation of Cope as the type specimen in 1994 in the Journal of the Wyoming Geological Society. The author of the newspaper article, Scott LaFee, did speak to some knowledgable people, including Ted Daeschler and Gary Rosenberg of the Academy of Natural Sciences. The article doesn’t note, though, that Cope is barred from being the type specimen because he wasn’t among the specimens seen by Linnaeus, and that Stearn’s designation (although mentioned by LaFee) preempts any later designation by Bakker. LaFee also seems to think a type specimen must be “typical” in the sense of average, which, as noted in the original post, it needn’t be.  I’m going to try to track down Bakker’s paper, and will post my findings here.

Update 2: I’d posted the update right after finding the mention of the article in the  Journal of the Wyoming Geological Society, because I thought it would take me a while to get a copy of the right issue of an obscure journal, and I wanted to immediately correct my claim that Bakker never published. Well, it turns out I was right in the first place. There is apparently no such journal.  There isn’t even a Wyoming Geological Society (there is a Wyoming Geological Association). I’m not sure where the claim originates: I’ve not found a mention of the fictional journal in Psihoyos’s book. It seems to me that some deliberate joking has gone on here. I’ll also mention here that I’ve seen some web commentary to the effect that Stearn’s designation doesn’t count, because “nobody can agree“.  This is incorrect: nomenclatural actions that follow the rules are valid, regardless of whether or not others think it was a good action to take.

The best YouTube video ever: Man + Dog + Sheep = Art

March 20, 2009 • 5:58 am

When I first saw this video I couldn’t believe it was real, but I am told that it is.  I can’t describe it, but here it is, as a Friday treat. Thanks to Matthew Cobb for calling this to my attention.

(Note:  when I lived in the UK one of my favorite television shows was “A Man and His Dog,” which simply showed sheepdog trials with border collies. I was astounded at the way a man and his dog, using only whistles from the guy, could control and direct a flock of sheep. Sadly, the BBC decided to can the show.)

In which I make a misteak about the Xoloitzcuintli

March 20, 2009 • 5:27 am

In a previous post, I stated that the Mexican Hairless breed of dog (the Xoloitzcuintli) was the only dog that could sweat through its skin.  An alert reader, Dr. Daven Presgraves of The University of Rochester, has written me to say that this is an error.  He cites two references, one a scientific paper and the other Wikipedia (see below).  Indeed, if you think about it, skin sweating as a unique feature of the breed seems unlikely.  The feature is very unlikely to be a simple byproduct of the mutation that causes hairlessness itself, and it also seems unlikely (though not impossible) that natural selection on the hairless dogs after domestication would create a system of skin-sweating.  Thanks to Daven!

(1)  Spontaneous comedones on the skin of hairless descendants of Mexican hairless dogs.

Kimura T, Doi K.

Exp Anim. 1996 Oct;45(4):377-84.

In the first experiment, the skin sebum and humidity, perspiration ability of sweat glands, and histology of spontaneous comedones were examined in hairless descendants of Mexican hairless dogs. The skin of females showed lower humidity than that of males. Some animals with a large number of comedones exhibited remarkably high skin sebum scores. The comedones were distributed throughout the dorsal skin, and a cluster of lesions was found mainly in the limbs and prepuces. The sweat glands showed no perspiration in the sudorific test. Histologically, both infant and adult animals had lesions of micro- and/or “blackhead” comedones. Plugged follicles containing abundant keratic substances associated well-developed sebaceous glands. Spontaneous comedones in the skin of hairless dogs were grossly and histologically similar to the acne vulgaris observed in human beings. The skin of some adult animals showed a large number of protrusive comedones which were solid cystic structures containing organized substances. In the second experiment, three kinds of antiacne agents (sulfur and camphor, sulfur and resorcinol, and ibuprofen piconol) were applied daily to the test sites for one month. These antiacne agents caused prominent extrusion of keratin plugs from follicular sites. The results suggest that the hairless dogs are a predictive model for evaluating the efficacy of antiacne agents proposed for acne treatment.

(2) <http://en.wikipedia.org/wiki/Mexican_Hairless_Dog>http://en.wikipedia.org/wiki/Mexican_Hairless_Dog

“The breed ranges in size from about 10 pounds/4 kg to 50 pounds/20 kg. Contrary to popular myth, the breed does not have a higher than normal body temperature, does not sweat through its skin and contact with a Xolo cannot heal injuries or illness. These myths are based in the breed’s traditional ceremonial use.”

chihuahua_che

Good new paper on the fish-tetrapod transition

March 19, 2009 • 2:17 pm

Thanks to Carl Zimmer for pointing out a new paper by Jenny Clack in Evolution: Education and Outreach: “The Fish-Tetrapod Transition: New Fossils and Interpretations.” This is a good paper for the non-scientist who wants to know more about the documentation of this important transition. In WEIT I wrote mostly about the Tiktaalik roseae transitional form, largely because a lot of work on that fossil was done by my colleague Neil Shubin. I was criticized by some for not mentioning the other important fossils in this sequence, and Clack’s article fills this gap very well. Highly recommended.fish

I get email from Philip Skell

March 19, 2009 • 9:23 am

The creationist chemist Philip Skell (see below) simply won’t leave me alone.  Yesterday he sent me an email proving that atheism is illogical.  His “logic” is amusing, and alert readers may want to entertain themselves by posing a hypothetical refutation to what follows (I don’t feel bad about posting this because Skell sent it as a mass mailing to about 20 people):

Date: Wed, 18 Mar 2009 14:27:21 -0700
From: Phil Skell

Subject: it’s not logical to be an atheist (????)

Some years ago I attended an event jointly run by the Humanists and Skeptics. One of the professors, who now heads up the science department of a major university, enjoyed a discussion we were having earlier and asked me to join him to continue our discussion at a post meeting dinner. I was the lone theist and ID advocate in a den of hard core evolutionist and skeptics. (Daniel in the lion’s den, literally) – It was a delight, and the dinner was free. I was placed at the end of the table with the professor on one side and a noted paleontologist on the other (who heads up the national history department of a National Museum). The conversation went something like this:
John; Professor, do you believe there is a God.

Professor: No! I’m an atheist.

John: How much knowledge do you have? Einstein said he had less than 1% of available knowledge. How do you think you compare to Einstein? Would you know more or less.

Professor: I would have to say I know less than Einstein.

John: So there’s over 99% of available knowledge you don’t have. Is that right?

Professor: Yes! That right.

John: So how can you say there is no God unless you know everything there is to know – you can’t can you?

Professor: No! You can’t.

John: You can’t logically be an atheist so you must be either a soft boiled or a hard boiled agnostic.

Professor: What’s the difference?

John: Well a hard boiled agnostic says that you can never know whether God exists or not.and..

Professor: Yes! Then I would have to say that I’m a hard boiled agnostic. I would say you can never know whether God exists or not.

John: But unless you know all there is to know, how can you say that you can never know.

Professor: I can’t really, can I.

John: No! So you must be a soft boiled agnostic.

Professor: What’s a soft boiled agnostic?

.John: Someone who just doesn’t really know for sure. Would that be you, then?

Professor: Yes! I guess so.

At this point the leading paleontologist sitting on the other side of me, who had earlier been distracted, interjected.

Paleontologist: What are you two talking about.

Professor: Whether God exists or not.

Paleontologist: I would have to say that I am agnostic or an atheist.

Professor: it’s not logical to be an atheist.