Rat-eating plant!

August 18, 2009 • 3:33 am

As reported by the Times online, scientists working in the Philippines have discovered a rare pitcher plant so large that it can digest rats. (These plants attract insects and other creatures, who drown in a pool of liquid secreted by and contained within the leaves, and are subsequently digested by the plant.)

The species, Nepenthes attenboroughii, is named after David Attenborough. To be fair, another larger species in the genus is known to have eaten rodents, which are almost certainly not the main food of these plants.
Like all carnivorous plants, pitcher plants are marvels of natural selection, and later I’ll have a few things to say about how they might have evolved from non-carnivorous relatives.

grren-360_602181aFigure 1. Nepenthes attenboroughii

Grayling: “By their works ye shall know them.”

August 17, 2009 • 3:15 pm

Greetings from Oggsford!

Over at the Guardian, Anthony Grayling writes about dogma, rationality, and Dembski.

There is something one can do to fight back, by taking part in the battle that underlies it all: the battle (to put it in Voltaire’s terms) between those who seek the truth and those who claim to have it.

On one side are those who inquire, examine, experiment, research, propose ideas and subject them to scrutiny, change their minds when shown to be wrong and live with uncertainty while placing reliance on the collective, self-critical, responsible and rigorous use of reason and observation to further the quest for knowledge.

On the other side are those who espouse a belief system or ideology which pre-packages all the answers, who have faith in it, who trust the authorities, priests and prophets, and who either think that the hows and whys of the universe are explained to satisfaction by their faith, or smugly embrace ignorance. Note that although the historical majority of these latter are the epigones of one or another religion, they also include the followers of such ideologies as Marxism and Stalinism – which are also all-embracing monolithic ownerships of the Great Truth to which everyone must sign up on pain of punishment, and on whose behalf their zealots are prepared to kill and die.

Not all biological pseudoscience comes from creationists

August 17, 2009 • 9:36 am

by Greg Mayer

In unrelated browses through the interwebs this morning, I came across two references to some high-priced gab fest called TED, whose slogan is “Ideas worth spreading”. Both the Dish and John Hawks link to this talk at TED by Elaine Morgan of aquatic ape infamy (see Jim Moore’s website). Whoever TED is, he may want to exercise a bit more quality control when selecting speakers. John Hawks’ own take on aquatic apes is worth reading, and I particularly like his epitomization of what pseudoscience is; it’s spot on.

Is the Aquatic Ape Theory fairly described as pseudoscience? Every statement of natural causes is potentially scientific. What distinguishes science from pseudoscience is social. Pseudoscience is supported by assertions of authority, by rejection or ignorance of pertinent tests, by supporters who take on the trappings of scientific argument without accepting science’s basic rules of refutation and replication. Pseudoscience is driven by charismatic personalities who do not answer direct questions. When held by those in power, like Lysenkoism, it destroys honest scientific inquiry. When held by a minority, it pleads persecution.

I think that the Aquatic Ape Theory in 2009 fits the description. (emphasis added)

The bitterness goes way back

August 17, 2009 • 8:54 am

by Greg Mayer

In a soon to be published paper in the Royal Society’s Biology Letters (abstract only), Carles Lalueza-Fox of Universitat Pompeu Fabra ( website in Catalan!) in Barcelona and colleagues report that they have sequenced the gene TAS2R38 from a Neanderthal man (press coverage by the BBC and NY Times). The ability to sequence genes from fossil material is remarkable enough in itself, but this study has particular interest, and not just because it was done on one of our fossil relatives.  Variation in the gene they sequenced is responsible for the polymorphism in modern man for the ability to perceive bitter tastes (some people can tast bitter, some can’t). Determining the frequency of the two forms (or alleles) of the gene is a classic high school biology exercise, carried out by seeing who can taste the bitter chemical PTC.  People who have either one or two copies (humans are diploid, so most genes are present in each individual’s genome in two copies) of the taster allele can taste bitter; those with two copies of the non-taster allele cannot. Today, the two alleles are about equally frequent, so that about 25% of people have two taster alleles (i.e. they are homozygous for the taster allele), about 50% have one taster and one non-taster (they are heterozygotes), and 25% are homozygous for the non-taster allele.

The Neanderthal they sequenced was a heterozygote, and thus could taste bitter (and also [with sample of only 1, mind you] had the same allele frequencies as we do). The polymorphism thus goes back somewhere on the order of 40,000 years. But Neanderthals split from the lineage leading to modern humans on the order of 300,000 years ago, with little or no subsequent interbreeding. So the polymorphism probably goes back even further, predating the modern Homo sapiens/Neanderthal split. Although an exciting find, this is not a record for the antiquity of a modern polymorphism: some are known to predate the human/chimp split (abstract only), and that’s millions of years ago.

Sunday miscellany

August 16, 2009 • 7:47 am

I’m off to the UK for a week for the Edinburgh Book Festival, where I’ll talk about about the evidence for evolution (in a joint session with Nick Lane, author of Life Ascending: The Ten Great Inventions of Evolution), and — in a second venue — debate a theologian and a philosopher about the difference between belief in evolution and belief in God and religion.  The estimable Greg Mayer will be handling the website when I’m gone.

I want to mention three articles before I go:

First, in last week’s edition of Science and the Sacred (the venue for “leaders of the BioLogos Foundation”), Darrel Falk, a biologist at Point Loma Nazarene University and co-President of BioLogos, says goodbye to Francis Collins as a member of the Foundation.  He also takes a swipe at atheists for making their work harder. His words fall into the familiar pattern:

Why is it that a group concerned about the advancement of scientific ideals is our most vocal opponent? We support science, including the science of evolutionary biology. We think this incongruity implies that for them the issue is not the preservation of science in our fragile world. For them, the issue is that they want to use scientific data to justify their own political and philosophical ends. They are trying to present science as claiming something it does not claim to justify their nontheistic view of the world. They want to rid the world of philosophies grounded in theism. It is clear from their writing that they have taken no time to carefully study the host of philosophers who are theists or the elegant theology of some of the world’s finest minds.

But what I really want to point out is Falk’s inadvertent highlighting of the difference between science and faith.  For in his piece Falk considers the question, “is there any potential finding of science that would cause me to lose faith”?  The answer, of course, is no, NOTHING could ever make him abandon his Christianity. As he notes:

  1. Even if it turns out that our sense of right and wrong emerges through natural selection and other natural processes that can be explained through science–and I personally suspect this will be the case — it does not in any way imply the absence of a personal God. The Creator, after all, may well function through natural selection in some manner that the scientific process is not equipped to detect.
  2. Even if it turns out that the human mind emerges from molecules interacting in a manner that can all be explained through the physical properties of matter — which I also suspect is the case — this in no way implies the absence of a God whose existence is necessary for that mind to come into being. It also has nothing to say about whether there is a God who interacts mind-to-mind with those persons who seek that interaction. Even if the cell and the information it contains is explicable through natural processes, this does not in any way imply the absence of God’s Spirit “hovering” (Genesis 1:2) and thereby influence the outcome in some manner beyond exploration by scientific tools.
  3. Even the most contentious issues don’t undermine core tenets of evangelicalism. Many brilliant persons have reached the conclusion that there is good reason to believe in a God who works in creation, a God whose action is beyond the realm of scientific testability. (See this earlier posting for more detail.)

And here we have the real difference between faith and science, for, unlike faith, science can answer the question, “How would I know if I were wrong?”  And if you can’t answer that question, how can you know if you are right?

Second, Falk mentions with approbation a piece by Mooney and Kirshenbaum, called “A Call for Peace in the Science/Faith Battle,” that also appeared on the same BioLogos-sponsored website on July 27.  You don’t have to read this essay, because you already know what it says: the usual indictment of shrill atheists, P.Z.-and-Dawkins bashing, world without end.  What is interesting, though, is that although M&K have relentlessly touted on their website every essay promoting their book, they don’t seem to have mentioned this one.  (I may be wrong, but a search revealed nothing.) Why is that, I wonder?

Finally, over at Metamagician and The Hellfire Club, the ever-civil Russell Blackford has finally lost patience with the twins:

The Colgate Twins have – and should continue to have – every legal right to exhort us to self-censorship, but such self-censorship is not in the public interest, and it is morally reprehensible for them to urge it … rather than simply addressing our arguments on their merits. The twins have moved the debate to a meta-level where our actual arguments are not addressed and we are forced to defend our very right to put them. This is a time-wasting distraction. Worse, we are presented as vicious and violent; we are demonised, rather than being treated as reasonable, peaceful people with a valuable role to play in public debate on serious issues.

When faced by this, we quite properly respond with anger and contempt. There is an appropriate time for those emotions – a time when they are healthy – and this is one of them. The twins have shown that they are not just reasonable people who happen to disagree with us on important issues. That would be fine. But they have no rational arguments relating to the issues of substance; instead, they are purveyors of hatred and bigotry who choose to demonise opponents. They choose to treat us as beyond the pale of substantive discussion of our ideas. Well, we are entitled to say what we think of them; we are also entitled to go on making our substantive points, patiently, civilly, and reasonably, as we have done throughout.

It will take more than these two privileged nitwits with bright, toothy smiles to get us to shut up.

It’s with a light heart that I depart for that Blessed Plot.

Caturday felid, part deux: Tuxedo cat earns high school diploma

August 15, 2009 • 5:14 am

Oreo C. Collins, a two-year-old rescue cat from Macon, Georgia, has earned a high school diploma from Jefferson High School Online.

Rescued from a ditch when she was no more than a teeny, tiny ball of fluff, Oreo C. Collins, a 2-year-old tuxedo cat from Macon, Ga., may be the very first in her family to obtain a ‘high school diploma’ — online or off. (Of course, we may never know for sure because, as she wrote in her “life experience essay” portion of the test, she’s adopted.) Kelvin Collins, president and CEO of the Better Business Bureau of Central Georgia and Oreo’s rescuer, encouraged Oreo to seek her “education,” by taking part in the BBB’s ongoing investigation of online diploma mills.

“Oreo’s a really smart cat,” Collins said in a telephone interview with msnbc.com. So smart that Oreo garnered mostly As in the online test, with some of her credits earned from her aforementioned life experience essay about her adoption into the Collins family. No doubt that’s why Collins solicited Oreo’s help in the Better Business Bureau’s experiment to expose Internet diploma mills.

Noting her humble beginnings by the side of the road where Collins found her during his son Brennan’s football practice, Oreo’s benefactor said he “is tickled pink to give her an opportunity to get an education.” Following a test and a $200 fee Collins paid for out of his own pocket, the young cat received her diploma from Jefferson High School Online.

090814-OreoNewspaper.239.standardFig. 1.  Oreo C. Collins, ready for Harvard

Caturday felid

August 15, 2009 • 12:02 am

by Greg Mayer

These two lions are father and son. The son is 23 months old.

DSCN4089
Adult male lion at Racine Zoo
23 month old male lion at Racine Zoo
23 month old male lion at Racine Zoo

Note that at 23 months, the cub is nearly as big as his father, and has lost most, if not all, of the juvenile spotting earlier noted by Jerry. In the full size photo, there’s the slightest hint of some spotting remaining on his right thigh.

“If this doesn’t give religion a bad name, nothing will.”

August 14, 2009 • 1:57 pm

by Greg Mayer

In the spring of 1979, the Shiite revolution in Iran was in full swing. The Shah had fled, Ayatollah Khomeini had returned, and summary executions had begun.

Often the only notice that a person is on trial is the announcement on the morning radio news that he has been executed. The front pages of the afternoon Persian-language newspapers are filled with grisly pictures of the bodies. (New York Times, April 11, 1979)

The full extent to which Iran would become a theocracy was still not entirely clear. On February 4th, the New York Times‘ R.W. Apple had asked “Will Khomeini turn Iran’s clock back 1,300 years”, and the short answer turned out to be “yes”.

I was an undergraduate in the department of Ecology and Evolution at the State University of New York at Stony Brook at the time, and often had lunch with a group of faculty and grad students in a cafeteria across the street from the biology building. At one of these lunches, during a discussion of events in Iran, a young assistant professor commented, “If this doesn’t give religion a bad name, nothing will.”  And for a long time, I thought nothing would. The following year marked the ascent of Ronald Reagan, and the beginning of  the agonizing descent of the Republican party from being the party of Lincoln to the party of Limbaugh, Beck, Robertson, Inhofe, and the Family.

I recalled this lunch time comment while thinking about Razib’s post on the greater acceptance of evolution among younger cohorts of Americans. I also recalled that the percentage of religiously unaffiliated had gone up noticeably from 1990 to 2008, and that another survey found the percentage was higher among young people. What could have happened so that younger people, growing up in the 90s and 00s, would be less religious? And then it occurred to me: 9/11.  Something finally happened which gave religion a bad name.  This was forcefully expressed at the time (here, here, and here) by Richard Dawkins.

Now, there may well be other or better explanations for these survey results (indeed, several alternatives have been proposed regarding acceptance of evolution in comments here at WEIT and GNXP, which alternatives might be tested with GSS data); and, clearly, religious believers can accept evolution (witness the young Catholic poll results).   But 9/11, while not giving religion a bad enough name for most people to give it up, may have led people to question on what grounds religious claims are to be evaluated, and what entitles them to respect.

UPDATE. Razib has done exactly what I had hoped: he’s tested my suggestion by looking at survey data [updated link to Razib’s new blog host] (26 surveys from 1973 to 2008). While not a decisive refutation of my suggestion, there’s not much support for it. Secularization increases from 1993 to 2008. The biggest increases occur from 1991 to 1998, with something of a plateau from 1998 to 2004, then there’s another bit of a jump from 2004 to 2006. It might be safest just to say that it increased from ’93 to ’08, and not try to interpret what may well be random variation around that rise. I would say the evidence for a lagged post 9/11 jump is modest at best, and most of the increase occurred pre -2001, so 9/11 is at most a lesser contributing factor.