Election 2010

November 3, 2010 • 5:34 am

It could have been worse: Harry Reid won, the Democrats retained control of the Senate, Christine O’Donnell lost, Barbara Boxer won.  The rest is too sad to recount, especially in my own state.

I’ve weathered these storms before, when Nixon crushed McGovern in 1972, and when Reagan and W. won twice.  The morons come and go, but at least there’s still a Democrat at the top.

We can look forward to two years of stalemate as the party of “no” keeps anything from happening. It’s going to be a grim period.

Lubrication may help:

Sean Carroll on the “supernatural”

November 2, 2010 • 9:16 am

At yesterday’s Cosmic Variance, physicist Sean Carroll entered the fray about whether science can find evidence for the supernatural (aka “God”).  Instead of fumbling about with the term “supernatural,” something I’ve preferred to avoid in favor of specifying characteristics of a god that one could look for, Carroll gets more specific than I by defining, helpfully, three types of phenomena.

  1. The silent: things that have absolutely no effect on anything that happens in the world.
  2. The hidden: things that affect the world only indirectly, without being immediately observable themselves.
  3. The lawless: things that affect the world in ways that are observable (directly or otherwise), but not subject to the regularities of natural law.

The first category is not, of course, subject to scientific investigation, and if that’s your kind of deistic or apophatic god, then of course science has nothing to say about it.

In the second category Carroll includes dark matter and quarks, which aren’t observable but have predictable consequences that can be tested scientifically.

Dark matter is unambiguously amenable to scientific investigation, and if some purportedly supernatural concept has similar implications for observations we do make, it would be subject to science just as well.

I’m a bit worried about the notion of a predictable and regular “supernatural” force that interacts with the world, because many of the commenters on this site and others will never accept regularity as evidence for anything we could conceive of as a god.  It could, for example, be space aliens or some previously unknown physical law about which we should suspend judgment, although of course there’s no reason why a god couldn’t act with some regularity.  It could, for example, answer the prayers of Jews but not Christians.  And if it rains far more frequently when Native Americans do rain dances than when they don’t, well, it’s just some natural phenomenon we don’t understand.

Number three, the “lawless,” take us into the real of the real popular idea of “supernatural”: miracles and the like.  I like the term “lawless” instead of “supernatural.” Carroll doesn’t see science as impotent before lawless phenomena, and I agree:

Let’s imagine that there really were some sort of miraculous component to existence, some influence that directly affected the world we observe without being subject to rigid laws of behavior. How would science deal with that?

The right way to answer this question is to ask how actual scientists would deal with that, rather than decide ahead of time what is and is not “science” and then apply this definition to some new phenomenon. If life on Earth included regular visits from angels, or miraculous cures as the result of prayer, scientists would certainly try to understand it using the best ideas they could come up with. To be sure, their initial ideas would involve perfectly “natural” explanations of the traditional scientific type. And if the examples of purported supernatural activity were sufficiently rare and poorly documented (as they are in the real world), the scientists would provisionally conclude that there was insufficient reason to abandon the laws of nature. What we think of as lawful, “natural” explanations are certainly simpler — they involve fewer metaphysical categories, and better-behaved ones at that — and correspondingly preferred, all things being equal, to supernatural ones.

But that doesn’t mean that the evidence could never, in principle, be sufficient to overcome this preference. Theory choice in science is typically a matter of competing comprehensive pictures, not dealing with phenomena on a case-by-case basis. There is a presumption in favor of simple explanation; but there is also a presumption in favor of fitting the data. In the real world, there is data favoring the claim that Jesus rose from the dead: it takes the form of the written descriptions in the New Testament. Most scientists judge that this data is simply unreliable or mistaken, because it’s easier to imagine that non-eyewitness-testimony in two-thousand-year-old documents is inaccurate that to imagine that there was a dramatic violation of the laws of physics and biology. But if this kind of thing happened all the time, the situation would be dramatically different; the burden on the “unreliable data” explanation would become harder and harder to bear, until the preference would be in favor of a theory where people really did rise from the dead.

There is a perfectly good question of whether science could ever conclude that the best explanation was one that involved fundamentally lawless behavior. The data in favor of such a conclusion would have to be extremely compelling, for the reasons previously stated, but I don’t see why it couldn’t happen.

. . . if the best explanation scientists could come up with for some set of observations necessarily involved a lawless supernatural component, that’s what they would do. There would inevitably be some latter-day curmudgeonly Einstein figure who refused to believe that God ignored the rules of his own game of dice, but the debate would hinge on what provided the best explanation, not a priori claims about what is and is not science.

This is where I agree with Sean, the philosopher Maarten Boudry, and, I think, Brother Blackford, and where we part company from P.Z Myers, The Great Decider, Eugenie Scott and the NCSE—and nearly everyone else.  At least I (and probably Sean) could envision theoretical cases where we’d see behavior as sporadic and lawless—and provisionally indicative of a god. Others would not.

And, lest we despair at all having settled into positions that are refractory to further change—which is probably the case—this debate has not been futile. It’s enabled us to clarify our own notion of what we mean by “supernatural,” what we mean by “the domain of science,” and what, if anything, could it mean to test for a god—or if even whether we find the idea of a god coherent.  I’ve much appreciated the back and forth we’ve all had, and am grateful to Sean for weighing in.

Trouble at Templeton?

November 2, 2010 • 6:17 am

Heather Wax, the main blogger for the Templeton Foundation’s Big Questions Online (BQO) site, arrived there from the Science and Religion Today website on July 22.  On Friday, after only three months, she left BQO and went back to her former home.

Some time ago, BQO disabled the ability for readers to leave comments on the articles.

Gary Rosen, Chief External Affairs Officer of the Templeton Foundation (i.e., their main mouthpiece, who sometimes wrote comments on Pharyngula, the Richard Dawkins website and other places), left Templeton a few months ago to go to the Wall Street Journal.  He’d barely been at Templeton two years, having joined in February, 2008 as editor of Commentary.

Maybe all these unconnected, but a little pulpo tells me that all isn’t well at the JTF.  One thing it can’t be, though, is money.

Halloween fun for Baptists

November 1, 2010 • 2:08 pm

This is unbelievable.  A group of atheists visited what’s called a “Judgment House”, run by the Wilmont Place Baptist Church in Oklahoma City.  Apparently those fun-loving Southern Baptists (remember Al Mohler?) put on a morality play each year designed to torture little kids into accepting Jebus instead of candy. The theme: a bullied teenaged girl who commits suicide, only to find herself standing judgment for unbelief.  Background: a month ago a gay teenager killed himself in Norman, Oklahoma after attending a city council meeting rife with homophobic comments.

The strident Abbeh Smith, aka ERV, reports (eschewing apostrophes):

I want nothing to do with the ‘morals’ and ‘ethics’ of people… ‘humans’… who think this kind of behavior– mocking bullying, mocking the suicide of young people– is appropriate. If this is what Christians like those found in Wilmont Place Baptist Church have to offer society, society is better off without them.
Buuuuuut Im sure that ‘Judgment House’ was just a mass hallucination by the militant, angry, Gnu Atheists of OKC. Disgusting ‘Christians’ like these dont exist. Theyre straw-man caricatures of thoughtful, clever, deep theism. How dare I write this post, castigating the heart-felt beliefs of caring, loving, Christians? They will NEVER accept evilution now. I ruined everything.

*shrug*

I wont sacrifice the corpses of children, ‘playing nice’, for sake of theistic evolution.

Im such an extremist.

Without religion we wouldn’t have Judgment Houses, and the only torture kids would undergo on Halloween would be to get Mary Janes instead of Milky Ways.

“Bring out your dead”: science identifies ancient plagues

November 1, 2010 • 10:44 am

It’s hard to imagine an infectious disease so horrible that it kills every second person. And not every second person it infects: every second person, period.  That was the “Justinian Plague” of sixth-century Europe.  Another wave of bubonic plague, beginning in 1347, killed a third of Europeans.  Imagine the terror that invoked, since the cause was completely mysterious.

Today’s New York Times reports on two recent studies of black death.  In one, by Stephanie Haensch et al., researchers sequenced plague DNA from medieval “plague pits” where bodies were thrown.  They not only identified the causal organism as the bacterium Yersinia pestis (definitively settling a long-standing debate), but also found that it invaded Europe at least twice: once from the north and once from the south.

And in the new Nature Genetics, Morelli et al. do a phylogenetic reconstruction of the plague’s genetic history from geographically widespread sequences.  The pathogen apparently originated in or near China and, using a molecular clock, the researchers traced and dated the successive waves of invasion that caused epidemics of Black Death.

Here’s the final paragraph of Nicholas Wade’s report; the “slaughters by accident” is apt but not completely accurate: while most plague is transmitted by fleas that bite infected rodents and then humans, the pneumonic form (which occurs when the disease infects the lungs) can go directly from person to person.

The likely origin of the plague in China has nothing to do with its people or crowded cities, Dr. Achtman said. The bacterium has no interest in people, whom it slaughters by accident. Its natural hosts are various species of rodent such as marmots and voles, which are found throughout China.

Fig. 1.  The terrifying costume of a medieval plague doctor.  Long coat, boots, glass goggles, and a beak stuffed with herbs and spices to mask the stench.

h/t: Hempenstein

_____________

Haensch S, Bianucci R, Signoli M, Rajerison M, Schultz M, et al. 2010.  Distinct clones of Yersinia pestis Caused the Black Death. PLoS Pathog 6(10): e1001134. doi:10.1371/journal.ppat.1001134

Morelli, G. et al. 2010.  Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics doi:10.1038/ng.705