You call that a beer?

January 9, 2011 • 6:16 am

I recently learned that a while back P.Z. Myers deliberately stepped on my turf by posting cute kittens instead of squids.  I’ve been waiting for revenge, and now have my chance.

This week the lad has been posting a daily beer.  These were bizarre concoctions, some laced with orange extract, others tasteless lagers, and still others whose distinguishing trait was not good taste but a fancy, colorful label.  And all the beers were cooled to refrigerator temperature, killing any taste that the brewmaster worked hard to achieve.

You call those beers? Now this is a beer:

Served at proper temperature, without the life having been chilled out of it, this Belgian abbey brew (yes, made by monks) is one of the top five beers I’ve had in my life.

What’s your all-time favorite brew?

Do we perceive reality? The checker shadow illusion.

January 8, 2011 • 10:11 am

I recently finished Steve Pinker’s The Blank Slate (recommended!), and in one chapter was taken by his discussion about whether human senses perceive a real, external reality or whether that reality is somehow “constructed” socially or by our senses.  If you’ve read the book, you know that Pinker comes down on the “it’s real” side (this solution is obvious to all but a moron*)—but not always: what we perceive as “real” is sometimes distorted by our expectations.  That, of course, is the basis of optical illusions.

One of Pinker’s examples was the famous “checker shadow illusion,” which completely bamboozled me. In case you haven’t seen it, I’ll reproduce it here.

Take a look at this checkerboard, and at squares A and B.  They’re different shades, right?

Nope—they are exactly the same color and shade!

Don’t believe it? (I didn’t.)  Check out this video, which puts a black background behind the squares to show that they’re the same color:

If you’re still not convinced, there’s another demonstration here.

This famous illusion was produced by Edward Adelson, a professor of vision science at MIT.  (I’ve given references to two of his papers below, the second of which has some other cool video illusions.)  According to Pinker (and I buy his point), these illusions are hitchhiking on evolved adaptations of our visual system.

Here’s Adelson’s explanation for the checker shadow effect, which involves how our visual system distorts external reality as way to compensate for how things should look under situations of shadow and local contrast.

Why does the illusion work?

The visual system needs to determine the color of objects in the world. In this case the problem is to determine the gray shade of the checks on the floor. Just measuring the light coming from a surface (the luminance) is not enough: a cast shadow will dim a surface, so that a white surface in shadow may be reflecting less light than a black surface in full light. The visual system uses several tricks to determine where the shadows are and how to compensate for them, in order to determine the shade of gray “paint” that belongs to the surface.

The first trick is based on local contrast. In shadow or not, a check that is lighter than its neighboring checks is probably lighter than average, and vice versa. In the figure, the light check in shadow is surrounded by darker checks. Thus, even though the check is physically dark, it is light when compared to its neighbors. The dark checks outside the shadow, conversely, are surrounded by lighter checks, so they look dark by comparison.

A second trick is based on the fact that shadows often have soft edges, while paint boundaries (like the checks) often have sharp edges. The visual system tends to ignore gradual changes in light level, so that it can determine the color of the surfaces without being misled by shadows. In this figure, the shadow looks like a shadow, both because it is fuzzy and because the shadow casting object is visible.

The “paintness” of the checks is aided by the form of the “X-junctions” formed by 4 abutting checks. This type of junction is usually a signal that all the edges should be interpreted as changes in surface color rather than in terms of shadows or lighting.

As with many so-called illusions, this effect really demonstrates the success rather than the failure of the visual system. The visual system is not very good at being a physical light meter, but that is not its purpose. The important task is to break the image information down into meaningful components, and thereby perceive the nature of the objects in view.

__________________

*As expressed in this limerick:

A Christian Scientist from Theale

Said, “Though I know pain isn’t real,

When I sit on a pin

And it punctures my skin

I dislike what I fancy I feel.”

Adelson EH (1993) Perceptual organization and the judgment of brightness. Science 262:2042–2044

Adelson EH (2000) Lightness Perception and Lightness Illusions. In The New Cognitive Neurosciences, 2nd ed., M. Gazzaniga, ed. Cambridge, MA: MIT Press, pp. 339–351

 

Caturday felid: biznss kitteh

January 8, 2011 • 6:59 am

I believe it was Miranda Hale who first called my attention to the totally awesome Biznss Kitteh video from Japan.  It’s a television ad that’s only 14 seconds long.  There is a lot of stuff going on here related to Japan and its culture. First watch it without reading further, trying to figure out what the ad is promoting and what everything means.  Then watch it again after reading the explanation I’ve put below.

A detailed explanation was kindly provided by Yokohamamama, an American who lives in Japan and produces the wonderful eponymous website; be sure to see her latest post on how to make o-bento rabbit apples, which includes a scientific experiment.

The video you sent (cho kawaii! super cute!) is for Jaran, a travel/ hotel reservation company.  I looked at their website, and most of the info was geared towards tourism, family and couples travel.  The commercial was promoting that they also do reservations for business travel.

The voice in the background is saying/singing “shucho, shucho”=”business trip, business trip”.  The beginning says “Hotel reservations for business trips, too!”  The cat is “Nyaran”, a play on “nyao”, which is Japanese for meow, “nyanko”, a cute way of saying “cat”, like calling a cat a “meow-meow”, and “Jaran”, which is the name of the company.  They’ve combined “Jaran” and “Nyanko”.

Kitteh says:  “My name is Nyaran!  Today is a business trip!”  He’s on the Shinkansen (bullet train), with a pet bottle of green tea and an Ekiben (a Station Bento lunch), and you can see Fuji out the window, which means he’s on his way to Osaka/Kyoto.  You can tell it’s winter, because it’s clear and Fuji is snow-capped.  His fish-shaped Meishi (name card/business card—*very* important to the Japanese) says “Nyaran” in Hiragana.

The Power Point presentation is for “Nikkyu Manju”= “Paw-shaped Sweet Buns”.  Wiki has a nice short article on Manju, if you’ve never eaten them.  They’re sweet and good, and taste nice with green tea.  Hiroshima has a unique Momiji-Manju (maple-leaf sweet bun), and Nyaran seems to be marketing a new Kitteh Paw Sweet Bun.  He says “These will really sell!”

Then the female narrator’s voiceover says again “Business trip hotel reservations, too!” (just in case you got so wrapped up watching that cat that you forgot what the commercial is about, I expect).  “Ra, Ra, Jaran!” (the company name).

I think the cat is used for three reasons:

1)  It’s a word play involving the name of the company and a cute word for cat (more memorable)
2)  He’s cho kawaiiiiii (super cute)—this is the Land of Cute, after all.  Most things are marketed that way.
3)  It’s a commercial for hotel reservations, and what better image of restful sleep is there than that of a boneless, sacked out cat?

There are three other biznss kitteh video ads for Jalan: “Visiting a spa,” “Dreaming of a hot date while wearing a cat robe,” and “Getting a massage,” but we’ll take up these another time.

Usagi ringo (rabbit apple)

Scalia: What rights for women?

January 7, 2011 • 3:38 pm

It’s a damn good thing that there aren’t five Scalias on the Supreme Court (there are 3.5 Scalia-equivalents: Scalia himself, Thomas, Roberts, and 0.5 Alito).  Unlike Scalia, Thomas at least has the virtue of keeping his yap shut (his wife does the dirty work).

This month’s California Lawyer has an interview with Scalia that is surprising even by his stone-age standards.  Remember that Scalia is an “originalist”, who believes that no rights inhere in Americans except those explicitly outlined in the Constitution or obviously intended by its authors.  In the interview, The Great Originalist shows the audacity of a dope, asserting that the Constitution doesn’t protect women against gender discrimination.  Here are a couple questions (in bold) posted to Scalia along with his answers (plain type).

In 1868, when the 39th Congress was debating and ultimately proposing the 14th Amendment, I don’t think anybody would have thought that equal protection applied to sex discrimination, or certainly not to sexual orientation. So does that mean that we’ve gone off in error by applying the 14th Amendment to both?
Yes, yes. Sorry, to tell you that. … But, you know, if indeed the current society has come to different views, that’s fine. You do not need the Constitution to reflect the wishes of the current society. Certainly the Constitution does not require discrimination on the basis of sex. The only issue is whether it prohibits it. It doesn’t. Nobody ever thought that that’s what it meant. Nobody ever voted for that. If the current society wants to outlaw discrimination by sex, hey we have things called legislatures, and they enact things called laws. You don’t need a constitution to keep things up-to-date. All you need is a legislature and a ballot box. You don’t like the death penalty anymore, that’s fine. You want a right to abortion? There’s nothing in the Constitution about that. But that doesn’t mean you cannot prohibit it. Persuade your fellow citizens it’s a good idea and pass a law. That’s what democracy is all about. It’s not about nine superannuated judges who have been there too long, imposing these demands on society.

And what if some states don’t pass laws allowing those rights?  And what about gays?  If the Framers thought anything about the Constitution and the Bill of Rights, it was that they were meant to guarantee certain rights that were universal and could not be touched by state law.

I guess Scalia took seriously the Declaration of Independence’s assertion that “all men are created equal.”  It doesn’t say anything about women.

But it does to me.  Here’s part of the Fourteenth Amendment:

All persons born or naturalized in the United States, and subject to the jurisdiction thereof, are citizens of the United States and of the State wherein they reside. No State shall make or enforce any law which shall abridge the privileges or immunities of citizens of the United States; nor shall any State deprive any person of life, liberty, or property, without due process of law; nor deny to any person within its jurisdiction the equal protection of the laws.

I’m no constitutional lawyer, but to me “equal protection of the laws” implies “no discrimination on the grounds of gender alone.” How can anybody deny that society and its moral standards moves on? That is the big problem with originalism.  Originalism isn’t really a philosophy; it’s a philosophical ploy to infuse right-wing politics into law.

And this (my emphasis in his answer):

What do you do when the original meaning of a constitutional provision is either in doubt or is unknown?

I do not pretend that originalism is perfect. There are some questions you have no easy answer to, and you have to take your best shot. … We don’t have the answer to everything, but by God we have an answer to a lot of stuff … especially the most controversial: whether the death penalty is unconstitutional, whether there’s a constitutional right to abortion, to suicide, and I could go on. All the most controversial stuff. … I don’t even have to read the briefs, for Pete’s sake.

Now there’s a justice who considers all the arguments. What a fine scientist he would make!

On the less important topic of  a certain comestible—one about which I have some knowledge—Scalia’s opinion sucks there, too.

You more or less grew up in New York. Being a child of Sicilian immigrants, how do you think New York City pizza rates?
I think it is infinitely better than Washington pizza, and infinitely better than Chicago pizza. You know these deep-dish pizzas—it’s not pizza. It’s very good, but … call it tomato pie or something. … I’m a traditionalist, what can I tell you?

Infinitely better than Chicago pizza?  If you’re an originalist, any pizza concocted after the first Ur-pizza is simply not a valid pizza. To my mind, a Chicago deep-dish or stuffed pizza is hands-down better than a greasy triangle of the New York City stuff.

The most infuriating thing about Scalia, Thomas, Alito, and Roberts is that they’re all relatively young.  They and their stinking legal opinions will be with us for decades.

“How extremely stupid not to have thought of that.”

January 7, 2011 • 9:09 am

The quote above is, of course, from Thomas Henry Huxley; it was his reaction after learning about Darwin’s simple but powerful idea of natural selection.  But I had exactly the same reaction after reading a new paper in The Proceedings of the National Academy of Sciences by Shevtsova et al. (reference below; free online access). The paper shows that insect wings, viewed under certain conditions of light, display stable patterns of iridescence that might be of profound behavioral (and evolutionary) significance.

I’ve spent 42 years looking at flies—ever since I was a sophomore in college—and I must have seen millions of them under the microscope.  Usually we look at them against a white background, which we use for inspecting the beasts for mutations or sorting them into males and females for mating.  Very occasionally, as when I dissected out female ovaries to count the number of ovarioles, I’d put them on a black background, which makes the white eggs more visible.

On those occasions, I could see an iridescent pattern in the wings, like what you see on the surface of a soap bubble or an oil slick on wet pavement.  I never paid that pattern any attention, and that was my mistake.

Unlike every other fly person who’s seen the patterns, the authors of the PNAS paper—Ekaterina Shevstova, two Swedish colleagues (C. Hansson and J. Kjaerandsen), and Dan Janzen, the well-known American naturalist and entomologist—didn’t ignore the colorful patterns. They found that these patterns (see examples below) are produced by interference between light reflected off the two surfaces of the chitinous wing membrane, that they are stable within an individual but often variable among sexes and among species, and that they’re found in most Hymenoptera (wasps and bees) and Diptera (flies).  They call the patterns “wing interference patterns” (WIPs), and discovered that they’re best seen against dark backgrounds, and when the light strikes at certain angles.

The paper is well explained by Ed Yong at Not Exactly Rocket Science, so I won’t go over the findings in extenso (plus, the paper is pretty easy to read).  First, look at a few of the WIPs.  Here’s Figure 1 of their paper (click to enlarge):

G, at the top right, is a hymenopteran (Closterocerus coffeellae), showing how the difference in background can suddenly reveal a hidden iridescent pattern.  H and I, below that, show the common fruit fly, Drosophila melanogaster (the one I’ve seen millions of), showing the same background-dependent pattern.  J and K are the wings of another species of Drosophila (D. guttifera), which has patches of pigment on the wings under “normal” illuniation but bright iridescence before a black background. The authors suggest that maybe the pigment spots are there not to be seen on their own, but to control the patterns of iridescence, which is what the other flies are really looking for.

A and B show two different but related species of hymenopterans, demonstrating that the WIPs can be highly visible when displayed in the right circumstances, and invisible otherwise.  C shows the wasp Neorileya: like many insects, it has a dark abdomen, and so the WIPs are visible when the wings are folded against the body.  D shows a sepsid fly displaying a bright pattern of color during a wing display (this may be a mating display; in many flies the males vibrate and waggle their wings when courting females).

Finally, E and F show the WIPs appearing in two fly species against different backgrounds, including the green of a leaf.

What are these patterns for?  The authors suggest that they may be of profound significance in insect communication. (See Ed Yong’s article for a precis).  As I suggested above, for example, they could be used in mating displays, with females preferring the patterns of males from their own species, since related species may differ in pattern.   The paper provides intriguing evidence that within a species of flies and wasps, the WIPs of males differ from those of females, making these patterns (like the colors or plumage of many birds) sexually dimorphic traits.

Whenever males and females differ in an ornamental trait without obvious adaptive significance, one hypothesis is that the trait evolved by sexual selection (see WEIT for an explanation).  This is particularly true if, in a group of related species, the males differ in pattern but the females don’t.  This invariance of a female trait coupled with strong variation in a male trait that could be related to mating is a strong signal of sexual selection.  And that’s the pattern we seem to see, at least in part of Fig. 3 from their paper:

In this figure, each column represents one of three related species of parasitoid wasp in the genus Achrysocharoides.  Two “replicate” males of the species are above the line, and the female is below the line.  So, for example, B and C are males of one species, and D is the female of that species.  F and G are males of a related species, H the female, and so on.

What you see is that while the WIPs of males vary among the species (but don’t vary much within a species), the females of different species (D, H, and L) are all pretty much the same.  To me, this implies sexual selection: the males diverge by sexual selection driven (perhaps) by female choice, while there’s no selection on the females to diverge.

This is precisely the pattern seen in insect genitalia: very often closely related species show big differences in male genital shape, while the females of those species are all the same.  As William Eberhart has pointed out often, this suggests sexual selection involving female choice. (See his wonderful and underappreciated book, Sexual Selection and Animal Genitalia.)

WIPs have other evolutionary significance.  They might be used not to recognize individuals of the same species for mating, but to discriminate against individuals of different species that have different WIPs.  That is, they could constitute a reproductive isolating barrier that contributes to speciation.

The authors (probably Dan Janzen, who studies fig wasps) point out another possible “use” of WIPs.  Female fig wasps pollinate the figs (and lay their eggs) by squeezing through the tiny hole at the bottom of the fig (the ostiole).  To get through, they break off their wings and leave them on the outside of the fig, at the same time secreting a fluid from their abdomen that glues the wings in a “protruding and visible position” on the fig.  This might serve as a signal to other females to leave that fig alone, since it’s already occupied with the reproductive output of a previous female.

Here’s a female about to enter the ostiole of a fig.  After she enters, and lays her eggs, she dies inside. Every time you eat a fig, you’re eating at least one dead wasp.

The WIPs are useful taxonomically, too: the authors have used them to diagnose “sibling species” of wasps: species that are almost morphologically identical.  It turns out that despite their similarity, the species have diagnostic wing patterns.  Once you separate species based on those patterns, you can begin to see subtler differences in morphology that you might have missed.

This paper doesn’t cure cancer or anything, but it’s a really nice presentation of a ubiquitous pattern in nature that may have important evolutionary explanations.  And how stupid of all of us drosophilists (and other entomologists) not to have paid attention to it!

________________

Shevtsova, E., C. Hansson, D. H. Janzen, and J. Kjaerandsen. 2010. Stable structural color patterns displayed on transparent insect wings.  Proc. Nat. Acad. Sci. USA Early edition. doi/10.1073/pnas.1017393108.

“Psychic” paper provokes backlash

January 7, 2011 • 5:02 am

Okay, not really on psychic powers, but on precognition.  Last October I posted about Daryl Bem’s paper in the Journal of Personality and Social Psychology, Feeling the future: Experimental evidence for anomalous retroactive influences on cognition and affect,” (download a preprint on his webpage).  I summarized its results as follows:

The paper purports to show that a choice that you make in a computer test can be influenced by stimuli you receive after you’ve already made the choice.  This implies you have some way, consciously or unconsciously, of detecting things that haven’t yet happened.

I also mentioned some criticisms of these results by others; and many of the hundred-odd comments were also critical.

Yesterday’ss New York Times reports a strong backlash by scientists about the paper.

“It’s craziness, pure craziness. I can’t believe a major journal is allowing this work in,” Ray Hyman, an emeritus professor of psychology at the University Oregon and longtime critic of ESP research, said. “I think it’s just an embarrassment for the entire field.”

The editor of the journal, Charles Judd, a psychologist at the University of Colorado, said the paper went through the journal’s regular review process. “Four reviewers made comments on the manuscript,” he said, “and these are very trusted people.”

All four decided that the paper met the journal’s editorial standards, Dr. Judd added, even though “there was no mechanism by which we could understand the results.”

But many experts say that is precisely the problem. Claims that defy almost every law of science are by definition extraordinary and thus require extraordinary evidence. Neglecting to take this into account — as conventional social science analyses do — makes many findings look far more significant than they really are, these experts say.

“Several top journals publish results only when these appear to support a hypothesis that is counterintuitive or attention-grabbing,” Eric-Jan Wagenmakers, a psychologist at the University of Amsterdam, wrote by e-mail. “But such a hypothesis probably constitutes an extraordinary claim, and it should undergo more scrutiny before it is allowed to enter the field.”

Dr. Wagenmakers is co-author of a rebuttal to the ESP paper that is scheduled to appear in the same issue of the journal.

Wagenmakers commented on my post and gave a reference to his own paper rebutting that of Bems.

The report goes on:

Peer review is usually an anonymous process, with authors and reviewers unknown to one another. But all four reviewers of this paper were social psychologists, and all would have known whose work they were checking and would have been responsive to the way it was reasoned.

Perhaps more important, none were topflight statisticians. “The problem was that this paper was treated like any other,” said an editor at the journal, Laura King, a psychologist at the University of Missouri. “And it wasn’t.” . .

. . . So far, at least three efforts to replicate the experiments have failed. But more are in the works, Dr. Bem said, adding, “I have received hundreds of requests for the materials” to conduct studies.

I’ll bet big bucks that the effect vanishes, simply on the grounds that a mechanism for precognition seems unlikely. Perhaps the paper did deserve more thorough reviewing given its controversial nature, but the truth will out.  And in the the advocates of precognition will be on even weaker ground.

Eric MacDonald on Adam and Eve

January 6, 2011 • 12:31 pm

Eric MacDonald’s new website, Choice in Dying, is taking off nicely.  His post on assisted suicide and Christmas was picked up by Andrew Sullivan, which brings a website more readers than even Pharyngula does. Eric is an ex-Anglican priest, and what he says about religion is worth reading; do bookmark his site.

His latest post, “‘Integrating’ science and religion” is about BioLogos‘s perennial obsession with Adam and Eve, something I’ve written about myself. But Eric goes into the background much more deeply, and with much more knowledge of theology.  Here are some excerpts from his take on physicist/Christian Denis Alexander’s “white paper” on Adam and Eve, a piece published at BioLogos:

For example, Alexander ends his “white paper” with the claim that

In relating anthropology to Biblical teaching we are in a much stronger position than that [than science itself, which sometimes must acknowledge that there is no coherent theory for apparently conflicting data-sets], since the models proffered go at least some way towards rendering the two data-sets mutually coherent. (9)

The reference to the two data-sets is entirely delusional. There is one data-set, the scientific findings of genetics and anthropology about the evolution of Homo sapiens, and its subsequent migration from Africa to populate the world, and then one story, sifted out historically from a great many origin stories, the one that has come down to us in the biblical text which is deemed sacred by Christians and Jews. In what sense can this story be considered a data-set? That it has been privileged by religious believers whose religion survived while others did not, scarcely gives it, in any reasonable sense, probative value regarding the nature of the world or the significance of human beings. . .

and

So when Alexander begins his “white paper” — it’s hard not to laugh derisively when typing those words — by saying that

Theological truths revealed in Scripture are eternal infallible truths, valid for the whole of humanity for all time, although human interpretations of Scripture are not infallible and may change with time over issues that are not central to the Gospel, (1)

he is merely making marks on paper, not saying anything. He wants there to be a “data-set” of theological truths, so he simply dragoons the Bible into providing one. But there are so many unsettled questions here, at the very beginning, that make it simply impossible for him to go on, if his aim is to say something coherent.

and

But this just shows how open to interpretation and reinterpretation the biblical stories are — even those that are central to what Alexander thinks of as the Gospel. So there is no way that we can provide a “data-set” on the religious side of the proposed integration of science with religion that is in any way coordinate with the data-sets that are the very stuff of science. Nor is there any way to settle the question of which interpretation is the right one regarding the biblical stories, though, in the case of science, the proof, as they say, is in the pudding, that is, in how things actually turn out. So a “model” for a theological “truth” is no more than a proposed interpretation of biblical texts considered as revealed by a god. And this is simply not enough to be going forward with, and even Denis Alexander must — at least one hopes that there is this much rationality left, despite its manifold deformations through the alembic of the Bible — know this even as he tries to fit the many shapes of religion into a mould that remains steadfastly obdurate.

Yes, people can consider me, P. Z., Dawkins et al. as “theologically unsophisticated,” and dismiss our arguments on those grounds, but nobody can say that about Eric.  They’ll have to deal with his arguments qua arguments.