Candy corn Oreos

September 12, 2012 • 6:38 am

Oreo cookies turned 100 this year, and on their anniversary I put up a post showing the variety of Oreo flavors marketed throughout the world.  Many of these sounded great. Sadly, there’s a new one that doesn’t look so good.

If you’re one of those souls with an asbestos palate who actually likes candy corn, you might be interested in these. They’re found only at Target, and only for a limited time.

The reviews are decidedly mixed. Candy corn is like cats—you either hate them or love them. I’m in the “intense dislike” category (for the candy, not cats!): I think they taste like sweetened wax, and I always traded them (and the odious Mary Janes) to my sister for other kinds of Halloween candy at the inevitable post-trick-or-treating swap. As the video below shows, comedian Lewis Black calls candy corn “the worst thing about Halloween.”

And here’s the video review.

If you actually like candy corn, put your name on the Wall of Shame below, and if you’re tried these cookies, weigh in with a review.

Sexual selection in ancient animals

September 12, 2012 • 6:01 am

Sexual selection, which is a subset of natural selection, is defined as “selection based on mate choice.”  It usually, but not always, takes the form of males competing for access to females, and results in the development of either armaments in males that help them compete in the battle for mates (antlers on deer, horns on stag beetles, etc.), or bright plumage, coloration, adornments, calls, or behaviors of males that catch the fancy of females (the bowers of bowerbirds, the plumage, colors, and strange behaviors of the New Guinea birds of paradise, the songs of male frogs, etc.).  We understand the competition scenario more than the “female preference” scenario, for it’s hard to figure out why females would prefer one plumage or adornment rather than another.

Nevertheless, the signs of sexual selection of living species are fairly clear (males have the weapons or adornments, females don’t), and we can do tests to see whether sexual selection seems to be a reasonable explanation.  In peacocks, for example, you find that males (the ones with the big tails!), who have more “eyespots” in their tails get more mates, sage grouse who display the most vigorously also win the mate race, as do African widowbirds with longer tails.

It’s harder to do these studies in extinct species, but a new paper by Knell et al. in Trends in Ecology & Evolution (reference below), gives some nice examples of possible sexual selection in fossils, as well as a list of things about the fossils that might indicate sexual selection.

First, a few fossils suggestive of sexual selection:

Skull of the Oligocene artiodactyl Protoceras celer with maxillary and supraorbital protuberances, a knob-like parietal protuberance, and enlarged upper canines.
The fan-shaped cranial crest of the Cretaceous hadrosaurid dinosaur Olorotitan arharensis.

Of course, features like the fan-shaped crest above could have had other functions (e.g., thermoregulation, species recognition, etc.), so we have to use other criteria, delineated below, to see if sexual selection is a likely explanation.

Here’s a weird one—perhaps the strangest trilobite of all, Walliserops trifurcatus from the Devonian of Morocco (Photo: Dr. B.D.E. Chatterton).  Check out those horns and the bizarre trident on its head.  Richard Fortey showed this one at a talk I saw in Madrid last year, and I believe he gave a functional explanation for it rather than imputing it to sexual selection. (The photo, by the way, is of a real fossil.)

Now, how can we get an idea whether such bizarre features arose by sexual selection as opposed to other mechanisms (direct natural selection not based on mate choice, genetic drift, as nonadaptive pleiotropic byproducts of other features that evolved, and so on)? The authors suggest five observations:

  • Sexual dimorphism.  This is the most obvious feature: if an exaggerated trait or ornament is found in only one sex but not the other (preferably males), that suggests sexual selection.  There are a couple of problems here. First, if you see two forms of fossils, one with a trait and one without, those could be males and females of one species, or they could be two different species, one of which has ornaments in both males and females. Also, there are forms of mutual sexual selection, in which males and females both prefer a trait, that could lead to both sexes having ornaments, and thus no difference to be seen in the fossil record.

But here’s one lovely example from the paper in which sexual selection is likely. It occurs in pterosaurs, flying reptiles of the Jurassic. As the TREE article notes:

Darwinopterus is a small pterosaur from the Middle Jurassic of China, known from numerous specimens. Some individuals are crestless, whereas others possess a bony crest located along the midline of the skull, which was probably associated with soft tissues that enlarged crest size substantially in life [77]. Crested specimens have a proportionally smaller pelvis and ventrally fused pelvic elements, whereas crestless specimens have an unfused, wider pelvis. Furthermore, one crestless specimen has a pterosaurian egg preserved in close association with its pelvis and so is clearly a female.

Here’s the uncrested female Darwinopterus showing her egg (arrow) immediately outside the cloaca (photo by Lü Junchang):

And here’s a reconstruction by Mark Witton that shows the sexual dimorphism of Darwinopterus:

  • Change in growth rate during development.  Because sexually selected traits are “expensive” in terms of metabolic/reproductive cost, and could make animals susceptible to predation, in living animals they tend to show up only at the end of development, when the animal is an adult and ready to reproduce. Indeed, that’s exactly where we’d expect to see them develop given the modern theory of evolution.  And this is indeed the case, as is seen in things like peacock feathers and deer antlers.  If one sees this in one sex of fossils (as we do with the bony crests of pterosaurs), it suggests sexual selection.
  • “Positive allometry”.  This means that as the body of an animals gets bigger during growth, the feature gets proportionally bigger than that. For example, if the linear dimension of body parts increases by a factor of 2 during development, sexual selection might be indicated if the size of the ornament increases by a factor of 3.5.  This is really related to the previous point; neither are conclusive, of course, because one can have such positive allometry for other reasons, for example simply because of the constraints of development or biomechanical reasons.  To deal with this, the authors suggest testing whether the degree of allometry is one expected under a hypothesis of sexual selection versus hypotheses like thermoregulation or use as a rudder (as in the crests of flying dinosaurs).
  • “Morphological disparity”.  This means that if there are related species in a group in which one or more species show evidence of sexual selection, that group will show a diversity of different traits that are elaborated.  For example, the birds of paradise of New Guinea are sexually selected, with the males having bright ornaments, coloration, feathers, and bizarre courtship behaviors, and yet the traits of males differ drastically among related species. This is probably because female preferences vary erratically among different species (I won’t go into why this might be the case), and so the males also come to differ. Click on this Google image search that shows some of the “morphological disparity” among sexually selected males in those birds.
  • Costliness.  Sexually selected traits tend to be “costly”: that is, they take a lot of metabolic energy that could be diverted to other traits, or even reduce survival by making the male bearer visible to predators. Male peacocks are not only highly visible to predators because of their coloration, but their long tails make it hard for them to fly.  Of course, if such traits are sexually selected, the advantage gained by attracting more females has to outweigh the “cost” of bearing the ornament; and experiments in some species show that this is indeed the case.  As the paper explains, if traits arose for another function, say to recognize members of the same species, one wouldn’t expect them to be so costly.

Remember that these features are indications of sexual selection in the fossil record, not absolute proof (which we don’t get in science anyway), and it’s hard to test various alternative hypotheses.  The evidence for sexual selection becomes stronger if the traits in a fossil species show a combination of the different properties shown above.  I find the example of Darwinopterus (above) pretty convincing.

I’ll leave you with one more example of a fossil species that might have experienced sexual selection: this is a Cambrian trilobite, Parablackweldeeria luensis (from the paper), showing a fossil (a) and reconstruction (b). The animal was unusual in having its eyes on the ends of long eyestalks:

This resembles the long eyestalks shown in diopsid flies, like this speciemen of Teleopsis dalmanni, in which males have eyes on long eyestalks as a result of sexual selection (the males “face off” against each other and butt each other with their heads; long eyestalks give an indication of head size and may help settle contests by forcing the smaller fly to give up sooner.

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Knell, R. I., D. Naish, J. J. Tomkins, and D. W. F. Hone.  2012. Sexual selection in prehistorical animals: detection and implications. Trends Ecol. Evol. Early online publication, Sept 7. DOI 10.1016/j.tree.2012.07.015

Video Q and A with Mohamed Noor about genetics and evolution

September 12, 2012 • 4:08 am

Yesterday I did a one-on-one interview on Skype with Mohamed Noor, an ex-Ph.D. student of mine who is now a professor at Duke. Mohamed, a great (albeit fast!) lecturer, is teaching an online course in Genetics and Evolution that formally starts October 10.  Enrollment is free and there are no prerequisites, so if you’re interested just sign up at the link. It’s a great way to begin acquainting yourself with the field that is one of the main topics of this website.  As of yesterday, the enrollment was 15,079!!

WEIT is one of the books recommended (not required) in the course, and some of the enrolled students, who had read much of the book, submitted questions for Mohamed to ask me.  In the video I give a brief intro and then answer the questions, some of which are very good.  Mohamed was kind enough to put the interview on YouTube.

I haven’t watched this myself (I can’t bear to see myself in these things), but present it for your delectation.  The second half was done on Mohamed’s backup computer because of technical difficulties, so the video quality suffers a bit.


			

A gorgeous species of mollusc

September 11, 2012 • 12:52 pm

Courtesy of the Facebook page Novataxa, which describes and shows species new to science, here’s a lovely terrestrial snail whose particulars follow. A bit of Googling, though, shows that it’s not new, but was described in 1864!

Name: Blaesospira echinus
Location: Sierra de la Penitencia; found only in Cuba
Photo by Adrián González-Guillén, a Cuban who lives in Ecuador

I don’t know anything else about it, but it’s one fine-looking snail, resembling a Christmas ornament:

 

And, from Simon’s Specimen Shells, here’s a mating pair. It’s amazing that they can get any copulation done with all those spines in the way:

h/t: Matthew Cobb

 

Thanks to readers for donating to DWB (and where you live)

September 11, 2012 • 11:48 am

I have an email from Brian, who assisted with the atheist/skeptic/secularist auction for Doctors Without Borders last weekend.  There were two autographed copies of WEIT on offer on eBay, and I’m happy to hear this:

We got $565 total for the two books and I mailed them off today.  It looks like your readers came through.  😉   Thanks again.

That’s a lot of medicine for the indigent and disaster-stricken! Thanks a lot to the two readers who paid that much for my book, and thanks also to those of you who donated without bidding for auction items.  I really appreciate it.

The donations, though, are far short of the goal, and if you want to donate, please go to this page and DO IT (you’ll recognize some of the names). As per prior arrangement, reader Marta (and, as a special offer valid this week only, any reader who donates  $100 or more and mentions this website) will get an autographed copy of WEIT, complete with hand-drawn cat picture. (Not valid for Ben Goren, who donated but already has an autographed book!)  If you do, just email me your address and how you’d like the paperback autographed.

And here’s where our readers have come from over the last 30 days; we have Greenland, Iceland, and China now. It’s a website without borders!  (Where are those readers in west Africa, though?)

And, for LOLz, here are the search terms used most often to find this site; these are over the whole 3.5 year-history of the place (has it really been that long?).  Click to enlarge:

It still baffles me why “shaved cat” and “blue ringed octopus” are perennial favorites.

“We all worship the same god”

September 11, 2012 • 8:15 am

UPDATE: People are posting comments on the picture page, i.e., the one you go to when you click on the chart below. Please post all comments on this page. If you wish, just repost your “picture page” comment below. Kthxbai.

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The title is a trope that we often hear from liberal religionists, especially Sophisticated Theologians™ who are bothered by criticisms that if religion does find truth, why are there so many religions with different “truths”?

To compare the notions that all religions are the same, reader Shuggy has created this handy graphic; as he says, “it illustrates how monotheists all worship the One True God, just with different names”.

Click to enlarge (resolution is better in the enlarged version). You’ll want to save this as a handy reference, for though it’s hilarious, it’s also true:

Apropos, here’s a quote from Bertrand Russell:

For four and a half months in 1918 I was in prison for pacifist propaganda; but, by the intervention of Arthur Balfour, I was placed in the first division, so that while in prison I was able to read and write as much as I liked, provided I did no pacifist propaganda. I found prison in many ways quite agreeable. I had no engagements, no difficult decisions to make, no fear of callers, no interruptions to my work. I read enormously; I wrote a book, “Introduction to Mathematical Philosophy”, and began the work for “Analysis of Mind”. I was rather interested in my fellow prisoners, who seemed to me in no way morally inferior to the rest of the population, though they were on the whole slightly below the usual level of intelligence, as was shown by their having been caught. For anybody not in the first division, especially for a person accustomed to reading and writing, prison is a severe and terrible punishment; but for me, thanks to Arthur Balfour, this was not so. I was much cheered on my arrival by the warder at the gate, who had to take particulars about me. He asked my religion, and I replied ‘agnostic.’ He asked how to spell it, and remarked with a sigh: ‘Well, there are many religions, but I suppose they all worship the same God.’ This remark kept me cheerful for about a week.    (Portraits from Memory, 1956, p. 30)

Uncle Eric on scientism and ways of knowing

September 11, 2012 • 5:36 am

UPDATE:  Eric has begun to respond to my comments in a preliminary post at Choice in Dying, and promises to provide a more thorough analysis later. He also called me “nephew”! I’m honored. But the example he uses is not a “fact” (the notion that WWII would have ended by Christmas of 1944 had Montgomery been allowed to be Supreme Commander in Europe rather than Eisenhower).  I’m not sure what this has to do with knowing anything true about the world, since it’s just a speculative scenario about what might have happened had things been different. There’s no way of knowing for sure.

____________

I have officially withdrawn the affectionate sobriquet of “Uncle” from Karl Giberson, since he’s been acting too religious lately, and bestowed it for the nonce on Eric MacDonald, who is also avuncular but never turns weird.

Eric has just finished a three-part series on “other ways of knowing,” taking issue with the assertion that science (which I construe broadly as “using a combination of empiricism, reason, replication, and doubt to find truths about the universe”) is the only way of apprehending truth. This is one of the few issues on which Eric and I part company, since he sees my scientism as badly misguided.

You can find the first two parts here and here, but I want to briefly take up the third, “Evidence, interpretation, and scientism,” posted at his site Choice in Dying three days ago.  Here’s his claim:

What I have been trying to claim is that there is another dimension of human knowledge, and that knowledge itself cannot be wholly accounted for by referring to empirical evidence and the natural sciences.

While I agree that the natural sciences aren’t our sole source of knowledge (how could they be, given archaeology, historical studies, and the like?), I don’t agree that we can get knowledge without referring to empirical evidence. What would knowledge mean if there’s no referent to reality, unless you could count revelation and intuition as knowledge? Knowledge must be verified, and that means by another observer and that means science.

Eric sees the scientific method itself as something developed without empirical foundation: that is, there is a philosophical context in which science is done, and that means that philosophy must be taken into account when determining whether something counts as knowledge:

In the first place, as I have already pointed out, science itself is, to a larger degree than most people, even scientists, seem to recognise, a theory-laden activity. In other words, in order to derive scientific knowledge from the evidence, there must be a context in terms of which the evidence can be held to be evidence. When Hawking and Mlodinow proclaim the death of philosophy, and then go on to do philosophy a few pages later, it is as though the interpretive model in terms of which they understand evidence is purely transparent to the evidence, so that they do not need at any point to slow down and consider whether, in fact, model-dependent realism either makes sense of the evidence, or is philosophically robust enough to provide the evidence with a theoretical foundation. That they may have already done so unconsciously, or because it is included within the scientific consensus within which they work, means that the interpretive framework has simply gone unacknowledged. So, even at the level of science, there is an interpretive process at work without which science itself would be largely helpless.

Well, not all science has much to do with theory at all. If you’re simply enumerating the species present in a given area, trying to see which is common and which rare, there’s no theory involved in that.  Some theory does come into play if you want to see how to save the rare species, but I would claim that much of that doesn’t have anything to do with philosophy, at least philosophy as most people conceive it.  Suppose you decide to save the rare species by conserving its habitat. That, of course, involves the supposition that decreased habitat means fewer individuals for a species, but is that really philosophy?

I really don’t see—and maybe I’m just naive here—how making a model is necessarily a form of philosophy.  When Darwin put his observations of biogeography together to posit that endemic species on islands were those that got there by rare dispersal events, and subsequently evolved into new species, is that philosophy? In what sense?  And when he tested that theory by putting plant seeds in salt water to see if they could survive a long sea voyage, in what sense is that driven by philosophy?  To construe “philosophy” in this way seems to me to make it meaningless, just one part of the way we find out stuff.

Now I’ll grant that we have to make an a priori assumption that the scientific method tells us truths about the world, and perhaps that’s philosophy.  But of course even that assumption is justified empirically: using it allows us to make interventions and predictions that work. The assumption is justified by its results.

The problem with Eric’s three pieces, I think, is that they suffer from two problems:

  • The absence obvious questions that, according to Eric, can’t be answered by science but only by other “ways of knowing.”  This is a flaw of many similar accusations of scientism.  They make nebulous accusations and never get specific.
  • Eric’s failure to not only provide questions, but to give examples of the kind of “non-scientistic” answers he envisions.

In part 3 of his series, he gives three examples of work that he says provides answers but not through science.  The first involves Biblical scholarship:

Take, for example, the whole business of biblical and textual studies. One of the most fascinating aspects of critical historical biblical studies is that it is indeed critical, but that it grew, in origin, out of a context of religious believing. One would expect, as a result, that some of its practitioners, if it were a truly critical discipline, would eventually abandon the beliefs which prompted the study in the first place, or at least that they would hold those beliefs in a highly qualified way. And this is precisely what we do find. Julius Wellhausen, David Strauss, Jack Spong, Don Cupitt, Graham Shaw, Gerd Lüdemann, Bart Ehrman, and many others have been forced to this conclusion by the interpretive results of their study of Christian and other scriptures. But simply forcing biblical criticism into the scientific paradigm is unhelpful in providing some understanding of what such critical historical scholarship consists in. These are studies carried out within the humanities, and the point that philosophers like Philip Kitcher are trying to make is that they are as worthy to be recognised as ways to the achievement of knowledge as are the natural sciences, even though, given their subject matter, the kinds of certainties achieved in the humanities are not as reliable or as stable as scientific knowledge achieved at the core of those scientific disciplines that are favoured when scientists speak in terms of how we know what is really true.

My response here is short: real Biblical scholarship, the kind that actually works out the sources of the Bible, when they were written, and so on, is similar to all good studies of history, in that it uses empirical methods, testability, hypotheses, and so on to understand where scripture came from.  This is science broadly conceived, and is hardly “another way of knowing”. The reason certainty is harder to achieve is because this (like evolution) is a form of inquiry resting on historical reconstruction, which is more difficult than, say, science based on lab experiments.  But it’s still science as I conceive of it broadly, and it is certainly, contra Eric, based on “empirical evidence.”

His second example is morality:

Morality, as I suggested before, is such a discipline, and there is interpretive truth to be achieved in morality (and ethics more generally), just as there is observational truth to be attained by science. . . (I will return to morality on another day). .

I look forward to that day and to Eric’s presentation of what he considers to be the “interpretive truths” to be found in morality.

Eric’s third example involves a book he just read, John Gray’s Black Mass: How Religion Led the world into Crisis. Eric describes Gray’s thesis in great detail, which is that modern revolutionary movements have taken over the features and strategies of older religious millenarian movements. Gray sees this as a bad development because he doesn’t see that political action can actually change the human condition.

Eric disagrees with Gray on points of fact, for example, on whether the features of millenarian movements really are shared by modern revolutionary movements.  And this is something susceptible to empirical study.  But that of course doesn’t answer the question of to what extent millenarianism influences modern ideology. That seems to be a matter for subjective interpretation that may not be settled, just as we can’t settle to what extent, exactly, impressionists were influenced by Turner. But Eric sees this as a question that does have an answer, and one not approachable by science:

The question as to the accuracy of Gray’s diagnosis and prognosis will be left aside for the moment. What I want the reader to see is that what Gray is saying here is not something that can be settled by the methods of science. What is at issue is the interpretation of historical movements and their culmination. The evidence, such as it is, is interpretive.

. . . Scientific studies of politics, society and economics are obviously essential if our understanding is to be well grounded, but what Gray’s work demonstrates is the importance of interpretive evidence in historical understanding, just as it is in our understanding of morality as well as in other aspects of the humanities. Trying to reduce our ability to know to the propositions and techniques of science — a growing tendency which Pigliucci and Kitcher deprecate as scientism — is to leave out too much knowledge that is of great importance to us. If the new atheism is going to have anything of enduring value to contribute to the ongoing project of improving the quality of human life by insisting upon the need for us rationally to understand ourselves and the world, room must be made for the humanities, like history, and the interpretive techniques that lie at the heart of their practice.

I am not sure what Eric means by “interpretive evidence”.  There is either evidence or no evidence, for all scientific evidence involves interpretation to some extent. Can we have “interpretive evidence” that it is wrong to torture someone? Is there “interpretive evidence” that most modern revolutionary ideology comes from millenarianism? To the extent that these questions can be settled at all, they must be settled by appeal to facts, and facts that scholars agree on. If there is no agreement, then there is no answer, just as if most scientists don’t agree that water has two hydrogen and one oxygen atom, that is not a scientific fact either.

I am not sure what kind of “interpretive evidence” Eric sees that doesn’t involve what he considers an important aspect of the scientific approach, “referring to empirical evidence.”

So I pose these two questions to Uncle Eric (I’ll email him about this post):

1.  What questions do you think can be answered pretty definitively, or what facts and truths can be established, without referring to empirical evidence?

2.  What are the answers to those questions that have been derived from “other ways of knowing”?