Why do animal species vary so much in the shape of pupils in their eyes?

August 10, 2015 • 11:30 am

Here’s a picture of some animal pupils from National Public Radio. The website showed them because they’re the subject of a new paper by M. S. Banks et al. in Sciences Advances (reference below; free download). The paper asks an interesting question: why do the pupils of vertebrate species vary so widely in shape? (Supplementary material, including database and movies, can be found here.)

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(From NPR): Can you guess which eyes belong to what animal? Top row, from left: cuttlefish, lion, goat. Bottom row, from left: domestic cat, horse, gecko. Top row: iStockphoto; bottom row: Flickr

Now the paper is long and complicated, with lots of simulations and math, but the upshot is pretty simple: animals tend to have vertical pupils if they are nocturnal “ambush” predators and aren’t too tall, while animals that have horizontal pupils tend to be prey that need to detect predators approaching them and also to scan the surrounding terrain to find a good escape route.

These conclusions come from surveying 214 terrestrial species and gathering information about their pupal shape, when they were active, and their mode of foraging. This was combined with optical and mathematical analysis to determine the optimal shape to see under different conditions.

The plot below shows three modes of foraging (herbivores, active predators who search around for their prey, and ambush predators who remain stationary before attacking)—all plotted against pupil shape. You can see that there’s a strong relationship between pupil shape and foraging mode: herbivores tend to have horizontal pupils, active predators circular and subcircular pupils, and ambush predators vertical pupils. (Each species is a separate data point.)

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(A) Different pupil shapes. From top to bottom: vertical-slit pupil of the domestic cat, vertically elongated (subcircular) pupil of the lynx, circular pupil of man, and horizontal pupil of the domestic sheep. (B) Pupil shape as a function of foraging mode and diel activity. The axes are pupil shape [vertically elongated, subcircular (but elongated vertically), circular, or horizontally elongated] and foraging mode (herbivorous prey, active predator, or ambush predator). Each dot represents a species. Colors represent diel activity: yellow, red, and blue for diurnal, polyphasic, and nocturnal, respectively. The dots in each bin have been randomly offset to avoid overlap.
As the statistical analysis below show (and the graph above, in which the green dots are absent in vertical ambush predators) there’s also a relationship between pupil shape and activity period. That’s also shown in the following statistical analysis. The P values, which show the strength of the relationship (the lower the P‘s, the stronger the relationship between pupal shape and activity period or “activity”),imply that foraging mode is more important a determinant of shape than is activity period. In fact, there’s no relationship at all between circular shape and activity period.

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(C) Results of statistical tests on the relationship between foraging, activity, and pupil shape. Multinomial logistic regression tests were conducted with foraging mode, activity time, and pupil shape as factors and genus as a covariate. Relative-risk ratios were computed for having a circular, subcircular, or vertical-slit pupil relative to having a horizontal pupil as a function of foraging mode or diel activity. Activity time proceeded from diurnal to polyphasic to nocturnal. Foraging mode proceeded from herbivorous prey to active predator to ambush predator. When the relative-risk ratio is greater than 1, the directional change in the independent variable (foraging or activity) was associated with a greater probability of having the specified pupil shape than a horizontal pupil.

The bulk of the paper is taken up with a complicated analysis of why different foraging modes should select (evolutionarily) for pupils of different shape. I’ll summarize the results very briefly; readers who seek further analysis should consult the original paper.

Vertical slit pupils.  It turns out that having a vertical slit in low light gives ambush predators an advantage in calculating the distance to a prey item. (Remember, these predators must accurately gauge the distance to a prey item before they strike.) The calculations suggest that a vertical slit is better at maximizing the blur of objects that aren’t in focus. That is, it helps the predator gauge the distance to a prey by seeing which aspects of the landscape are blurred and which are not. The vertical pupil also aids in stereopsis: the comparison of images from different eyes that is also used to judge distance to prey. In general, then, distance-judging, which is vital if an ambush predator is to eat, is maximized in low light by having a vertical slit. For such a predator, those that can best judge distance to prey are those that get more noms, and thus leave more offspring. And that, O Best Beloved, is why your small, ambush-predator cat has eyes with vertically slit pupils.

That said, the advantage of having a vertical slit, for complicated optical reasons, diminishes as the eye gets higher off the ground. So the authors made and tested a prediction made from theoretical considerations:

We predict, therefore, that shorter frontal-eyed, ambush predators will be more likely to have a vertical-slit pupil than taller animals in that niche.

We evaluated this prediction by examining the relationship between eye height in these animals and the probability that they have a vertically elongated pupil. There is indeed a striking correlation among frontal-eyed, ambush predators between eye height and the probability of having such a pupil. Among the 65 frontal-eyed, ambush predators in our database, 44 have vertical pupils and 19 have circular. Of those with vertical pupils, 82% have shoulder heights less than 42 cm. Of those with circular pupils, only 17% are shorter than 42 cm.

Nearly all birds have circular pupils. The relationship between height and pupil shape offers a potential explanation. A near and foreshortened ground plane is not a prominent part of birds’ visual environment. The only birds known to have a slit pupil (and it is vertically elongated) are skimmers [Rynchopidae]. . .

Foxes, for example, have vertically slit pupils, but the taller wolves have round ones.

Horizontal slit pupils. Based on a similar analysis, the authors found that, in theory, terrestrial animals that are prey should have horizontally slit eyes. For that shape of pupil enables them not only to get a wide look at the horizon around them, thus detecting the presence of predators, but also scope out escape routes by surveying at the landscape. As they say:

Most terrestrial lateral-eyed animals are prey, so their adaptive strategy is to detect predators approaching along the ground and to flee quickly to avoid capture. The visual requirements for this strategy are striking. On the one hand, these animals must see panoramically to detect predators that could approach from various directions. On the other hand, they must see sufficiently clearly in the forward direction to guide rapid locomotion over potentially rough terrain. In both cases, the regions of greatest importance are centered on or near the ground.

Their analysis shows that horizontally elongated pupil gives a better panoramic view of the ground.  This led to another prediction. If this is the reason for such a pupil, then if the animal changes its head alignment, as when grazing, it should still keep its eyes horizontal so the pupils align with the horizon. And this is what they observed when looking at grazers, which show this “cyclovergence.”

Conclusion: The authors have made a good hypothesis that seems to explain well the diversity of pupil shapes among animals based on both their foraging mode and time of activity.

I see one potential problem: the correlations are based on many species that are closely related (there are many snakes, for example), so each data point does not necessarily represent an independent act of natural selection molding pupal shape, which is what their correlation in effect assumes. In reality, animals could have inherited their pupil shape from a common ancestor and not evolved it independently, so using, say, ten related snakes is not the same as documenting ten independent events of evolution. This problem, one of “phylogenetic inertia,” reduces the authors’ statistical power. (As an example, we can’t claim that all cat species independently evolved sharp canine teeth to kill their prey and rip apart its flesh. So you can’t use every cat species as an independent test of whether sharp canines are associated with ambush predation.)

They recognize this problem and try to overcome it by giving instances in which animals have diverged from the pupil shape of their ancestors in the predicted direction based on changes in lifestyle. The ancestral canid, for instance, is thought to have been an ambush predator active at several times of day, and having subcircular pupils. The authors note that vertical slit and truly circular pupils evolved independently twice each within the canids, and in the direction expected from their activity periods and hunting patterns.

This does show that “phylogenetic inertia” can be overcome, and that the data points are to some extent independent. But we don’t know how independent, for showing some independent evolution doesn’t tell us how often phylogenetic inertia has rendered other points non-independent.  As far as I can see, the authors have recognized the problem of non-independence and dealt with it the best way they can, but haven’t fully overcome the problem.

What they need is an analysis that uses only those data points known to represent independent cases of evolution (Allen Orr and I did this in our work on speciation in Drosophila). I’m not sure it’s possible in this dataset, but until it’s done, the statistical strength of their data remains in question. I think the authors are probably right in their conclusions, and I really like the paper, but I’d also like to see a statistical analysis that is based on “phylogenetically corrected” data.

________

Banks, M.S. et al. 2015. Why do animal eyes have pupils of different shapes? Science Advances, Aug. 7, 2015, online.

Woman drowns in Dubai because her father wouldn’t let male lifeguards touch her

August 10, 2015 • 8:45 am

UPDATE: More recent information, posted here, suggests that a. this incident actually happened nearly 20 years ago, not recently as the news reports suggest, and b. it’s based on a lifeguard’s memory, and so might not have happened. In principle it could be verified from police records, but let’s suspend judgment until we know more.

_____________

And here’s the bad news that more than offsets the previous post.

Place another life in the negative pan of the “Is religion good for humanity?” balance.  This incident is almost unbelievable, but we all know how faith makes people completely irrational. (Thanks to the several readers who sent me links.)

As reported the Emirates 24/7 News, the Independent and other venues, a man (described as “Asian” by Emirates, but I strongly suspect that, based on the circumstances, he was Muslim) prevented lifeguards from rescuing his drowning daughter because he didn’t want strange men to touch her, which would “dihonour” her. She died, but could have easily been saved as she was close to shore. From the Independent:

The unnamed man had said he preferred to let her die rather than be touched by strange men after she got into difficulty on a beach in the city, a top Dubai official told Emirates 24/7.

Lt. Col Ahmed Burqibah, Deputy Director of Dubai Police’s Search and Rescue Department, said the incident had stuck with him.

He said: “The kids were swimming in the beach when suddenly, the 20-year-old girl started drowning and screaming for help.

“Two rescue men were at the beach, and they rushed to help the girl.

“However, there was one obstacle which prevented them from reaching the girl and helping her.

“This obstacle was the belief of this Asian man who considered that if these men touched his daughter, then this would dishonour her. It cost him the life of his daughter.”

According to Lt. Col Burqibah, the man became aggressive, physically pulling the rescue men away from the water and said he “prefers his daughter being dead than being touched by a strange man”.

Can you believe that? Yes, I think you can, for religion poisons everything, including the love of parents for their children.

The man is being prosecuted, but only for “stopping the rescue team from doing its job.” He should be prosecuted for manslaughter, for this is in effect an honor killing.

Good news from Oz: parents fight back against Christian proselytizing in public schools

August 10, 2015 • 8:00 am

This morning we have some good news and some bad news about religion. First the good news: reader John sent me a photo and this link to an article in the Sydney Morning Herald. Apparently, at least in the state of New South Wales, “Special Religious Education” (SRE) is offered to students in many public schools, and it’s an education in Christianity (“General Religious Education”, GRE, is also offered). I thought that parents can opt out of either, but the report below suggests this isn’t the case. I’m a bit confused, and perhaps readers from Australia can enlighten us. Here’s part of the report:

Parents concerned about religious evangelism in public schools will launch a campaign urging families to opt out of scripture classes as a high profile minister calls for a “quality general religious education program” to replace instruction in specific denominations.

The parent-run lobby group, Fairness in Religions in Schools, has paid for a billboard attacking Special Religious Eduction classes in public schools, to be erected at a busy intersection in Liverpool on Monday.

Fairness in Religions in Schools chief executive Lara Wood said the billboard was in response to what the group sees as evangelism in public schools which they claim is poorly regulated by the NSW government.

“Scripture classes push messages about sin, death, suicide, sexuality and female submission onto children without the knowledge of their parents,” she said.

“The Department of Education has no control over the program and it is time these classes were removed or at least regulated by the government.”

A spokesman for the Department of Education said it works with scripture class providers to ensure the material is “sensitive, age appropriate and of a high standard.”

Screw that; this stuff doesn’t belong in public schools, whether or not it’s optional. What’s the educational point of teaching Christianity in such schools? Leave the proselytizing in the churches where it belongs.

Meanwhile, here’s the billboard designed by the parents, and it’s a good one.

Capture

Readers’ wildlife photographs

August 10, 2015 • 7:15 am

We’re back to the Galápagos today. Reader Robert Lang, who is overly modest, sent a bunch of photos a while back, adding some notes (indented):

I am a longtime reader of your website and have enjoyed and admired the readers’ photos, while considering that photos of such quality are generally beyond my equipment/skills/access. But I recently was privileged to visit the Galápagos islands where the animals exhibit such lack of fear of humans—really, lack of care, they seem to think of us as just objects—that one can get close enough to take pretty decent pictures even with ordinary skills and cameraware. It was an amazing experience, and I’d welcome the chance to share some of the photos with your readers, if you feel so inclined.
I do feel so inclined, and here they are:
The Sally Lightfoot crabs (Grapsus grapsus) are everywhere along the coast. The babies are black and well-camoflaged against the black volcanic rock, but the adults stand out brilliantly.

sally_lightfoots

The true stars of the coastline are, of course, the marine iguanas (Amblyrhynchus cristatus), who lie around in heaps, warming themselves before their next foraging swim.

marine_iguanas

Lava lizards (Microlophus albemariensis) are popular headgear among the fashionistas of marine iguanas.

iguana_w_headgear

The frigate birds (Fregata magnificens) nested literally right next to the well-trodden nature trail. Here’s two on nests; the male’s red throat pouch is visible.

frigates_on_nest

When he puffs it out, it’s quite noticeable.

frigate_w_pouch

There are two species of frigate: the Great (Fregata minor) and the Magnificent. (I wonder if there’s also a Pretty Good Frigate, from Minnesota.) The Great Frigate has brilliant green iridescent feathers on its back.

great_frigates

Their chicks, like those of so many seabirds, are fluffy and white. But they still have that vicious hooked bill!

male_frigate_w_chick

We saw quite a few Galapagos hawks (Buteo galapagoensis), which are said to be most closely related to the Swainson’s hawk. Here it serves as both top predator and scavenger.

galapagos_hawk

This one was picking over the remains a marine iguana. They prey particularly on female iguanas that are exhausted after digging a burrow, laying their eggs, and covering them up.

galapagos_hawk_feeding

There are three types of boobies: the Nazca (Sula granti), blue-foot (Sula nebouxii), and red-foot (Sula sula). The blue-footed boobies were quite common along the coast.

blue_foot

The red-footed boobies nested in trees a bit inland but still within sight of the coast.

red-foot_w_chick

The flightless cormorants (Phalacrocorax harrisi) have comically small wings, but are speed demons underwater.

flightless_cormorant

They are matched in underwater prowess by the Galápagos penguins (Spheniscus mendiculus). It’s weird to see penguins and not be freezing. (In fact, it was sweltering.)

penguin

 I had to take a picture of this one because I leave no tern on stone.

tern

Also a great blue heron (Ardea herodias) along the coast.

great_blue

Inland we saw one of the mockingbird species (Mimus parvulus) that figured heavily into Darwin’s thinking.

mockingbird

Though not nearly as common as the marine iguanas, we saw a fair number of land iguanas (Conolophus subcristatus), which are larger and more brightly colored than their marine kin.

lang_iguana

Not to shortchange the invertebrates, but there’s not that many as one might expect in a tropical climate. One of the more noticeable ones is the Galapagos carpenter bee (Xylocopa darwinii), which is sexually dimorphic. The females are black:


carpenter_female

The males are a beautiful golden color.

carpenter_male

And last, but surely not least, the main event: tortoises (Chelonoidis nigra) ! Those that live in the highlands live the life of Riley, surrounded by lush vegetation. They eat all vegetation within reach of their long neck, then move a few inches and repeat the process, all day long.
tortoise_highlands
But those that live down near the coast in blasted scrub have slimmer pickings, and accordingly, they are a bit more adventurous, culinarily speaking. This one, alas, was sadly disappointed after his first taste.

tortoise_nomming

Monday: Hili dialogue

August 10, 2015 • 5:30 am

Another week has arrived, but at least it won’t be hot; temperatures are predicted to be in the low 80s for several days. And I’m grateful to no longer be in Indio, California! It’ll be a busy week with four radio interviews, one of which involves a four-hour trip to Evanston. (You can hear me this morning on Wisconsin Public Radio.) Meanwhile in Dobrazyn, the Princess, who is looking very lovely these days, is showing disgust for human noms:

Hili: This doesn’t look good.
A: What doesn’t look good?
Hili: This tomato salad of yours.
P1030

In Polish:
Hili: To nie wygląda dobrze.
Ja: Co nie wygląda dobrze?
Hili: Ta wasza sałatka z pomidorów.
As lagniappe, Malgorzata translated Steve Pinker’s review of Faith versus Fact into Polish, and published it on Listy. At the bottom is a picture of the book’s author, to wit:
P1010539d_s

 

This week’s book-related interviews

August 9, 2015 • 3:00 pm

I’ll be doing three radio interviews this week (actually four, but one will be broadcast later), and I’ve put the information below if you’re interested in listening. All are streamed lived on the internet.

Monday, August 10, 8-9 a.m. Central (Chicago) time: The Joy Cardin show on Wisconsin Public Radio (listen live at this site; programs archived here).

Tuesday, August 11, 4-6 p.m. Central time: The Milt Rosenberg show on WCGO Chicago. Listen live here and get archived podcasts here.

Wednesday, August 12, 9:35-9:50 p.m. (Note, NOT a.m.!) Central time: The Jordana Green Show, WCCO AM, Minneapolis. Listen live here, podcasts archived here.

The least religious major cities in America

August 9, 2015 • 1:45 pm

Once again, Portland takes the honors, at least according to this August 3 poll from the Public Religion Research Institute.  The yellowish-green bar comprises the “unaffiliated,” and remember that many of these may believe in God, but not belong to a church.

The data below are grouped into four clusters: those dominated, respectively, by Catholics, the unaffiliated, and white evangelical Protestants.

Time to move to Portland (which of course has many amenities other than godlessness)!

Top-Three-Religions-by-City-640x819